miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8089 3' -58.6 NC_001978.2 + 11691 0.67 0.409813
Target:  5'- --cGG-CAGCGUUGCG-GC-UCGCCCu -3'
miRNA:   3'- guuCCaGUCGCAGCGCuCGcGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 25045 0.67 0.409813
Target:  5'- gAAGGUCAGCGcccauUCgGCaAGCGUCuucgcGCCCu -3'
miRNA:   3'- gUUCCAGUCGC-----AG-CGcUCGCGG-----UGGG- -5'
8089 3' -58.6 NC_001978.2 + 2737 0.67 0.404277
Target:  5'- gCAAGGUCGaucuuccggcGCGacgacgcguguuccuUCGUGAuGCGCgCGCCCc -3'
miRNA:   3'- -GUUCCAGU----------CGC---------------AGCGCU-CGCG-GUGGG- -5'
8089 3' -58.6 NC_001978.2 + 10887 0.67 0.400613
Target:  5'- -cGGGUgGacccGUGUUgGCGAGCGUgGCCCg -3'
miRNA:   3'- guUCCAgU----CGCAG-CGCUCGCGgUGGG- -5'
8089 3' -58.6 NC_001978.2 + 41224 0.67 0.391544
Target:  5'- gUAAGG-CAGUGggCGCGcacuGUGCUACCUg -3'
miRNA:   3'- -GUUCCaGUCGCa-GCGCu---CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 21982 0.67 0.391544
Target:  5'- aCAuGG-CAGCG-CGCGAccgcgaagGCGCCAUUCa -3'
miRNA:   3'- -GUuCCaGUCGCaGCGCU--------CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 13190 0.67 0.382611
Target:  5'- uCGGGGUCGGCaG-CGuCGAGCGgCAUUCc -3'
miRNA:   3'- -GUUCCAGUCG-CaGC-GCUCGCgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 30134 0.68 0.373815
Target:  5'- ---aGUCGGCaaaGCGuGCGCCACCa -3'
miRNA:   3'- guucCAGUCGcagCGCuCGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 13108 0.68 0.365156
Target:  5'- -cGGG-CAaCGUCGCGAuaaCGUCACCCg -3'
miRNA:   3'- guUCCaGUcGCAGCGCUc--GCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 19643 0.68 0.365156
Target:  5'- aCAAGGUCAGCGaccCGCGcaaGGaCGCCuucgacaagGCUCg -3'
miRNA:   3'- -GUUCCAGUCGCa--GCGC---UC-GCGG---------UGGG- -5'
8089 3' -58.6 NC_001978.2 + 34350 0.68 0.356637
Target:  5'- gCAGGGuUCGcGCGUCGUGuacAGCGUgGCuCCg -3'
miRNA:   3'- -GUUCC-AGU-CGCAGCGC---UCGCGgUG-GG- -5'
8089 3' -58.6 NC_001978.2 + 27889 0.68 0.356637
Target:  5'- ---aGUCGGCGgcuUCgGCGaAGCGuCCGCCCa -3'
miRNA:   3'- guucCAGUCGC---AG-CGC-UCGC-GGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 23467 0.68 0.356637
Target:  5'- --cGGUCAGCcgUGCGGGUGCCcgaaGCUCu -3'
miRNA:   3'- guuCCAGUCGcaGCGCUCGCGG----UGGG- -5'
8089 3' -58.6 NC_001978.2 + 8963 0.68 0.338392
Target:  5'- --uGGUCGGCGUCGCccauaaucgugaucuGAaugggucgagccacaGCGCC-CCCu -3'
miRNA:   3'- guuCCAGUCGCAGCG---------------CU---------------CGCGGuGGG- -5'
8089 3' -58.6 NC_001978.2 + 8220 0.68 0.331927
Target:  5'- uCAAGGcaggcUCAGCGgcUCGCGuGCcguauGCCGCCg -3'
miRNA:   3'- -GUUCC-----AGUCGC--AGCGCuCG-----CGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 16923 0.69 0.323975
Target:  5'- -cAGG-CAGCGUC-CGAcGUGCUugCCa -3'
miRNA:   3'- guUCCaGUCGCAGcGCU-CGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 6866 0.69 0.293594
Target:  5'- aCAAGGUCGGCGUUcacgGC-AGCGCaagcgGCCUu -3'
miRNA:   3'- -GUUCCAGUCGCAG----CGcUCGCGg----UGGG- -5'
8089 3' -58.6 NC_001978.2 + 22105 0.69 0.292863
Target:  5'- -cAGGUCGGCGcgaaccuUCGUGuaccGGCgaGCCGCCCc -3'
miRNA:   3'- guUCCAGUCGC-------AGCGC----UCG--CGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 34103 0.69 0.286354
Target:  5'- -uGGGaacGCGUacaguccgCGCGAGuCGCCACCCa -3'
miRNA:   3'- guUCCaguCGCA--------GCGCUC-GCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 18678 0.7 0.279256
Target:  5'- -cGGGUCAGCGaaUGCGAcGCGCUgauAUCCg -3'
miRNA:   3'- guUCCAGUCGCa-GCGCU-CGCGG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.