miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8089 5' -54.3 NC_001978.2 + 41440 0.66 0.64324
Target:  5'- -cGGACGcuugccGAAG-UCCAUUGCCGUCUUc -3'
miRNA:   3'- acUCUGU------CUUCgGGGUAACGGCAGAA- -5'
8089 5' -54.3 NC_001978.2 + 33704 0.66 0.636318
Target:  5'- cGAGACGGAgacgccgaagugaucAGUgCCGUaaucaucgaucUGCCGUCg- -3'
miRNA:   3'- aCUCUGUCU---------------UCGgGGUA-----------ACGGCAGaa -5'
8089 5' -54.3 NC_001978.2 + 729 0.66 0.608643
Target:  5'- cUGAGGCuGAGGCCaCCcgcGCCGUgUa -3'
miRNA:   3'- -ACUCUGuCUUCGG-GGuaaCGGCAgAa -5'
8089 5' -54.3 NC_001978.2 + 4384 0.67 0.562869
Target:  5'- cUGGGGCAGggGCgCCGUcGCUG-Cg- -3'
miRNA:   3'- -ACUCUGUCuuCGgGGUAaCGGCaGaa -5'
8089 5' -54.3 NC_001978.2 + 36737 0.69 0.4233
Target:  5'- gGAGACGGc-GCCCCAg-GCCGUUc- -3'
miRNA:   3'- aCUCUGUCuuCGGGGUaaCGGCAGaa -5'
8089 5' -54.3 NC_001978.2 + 29643 0.71 0.366195
Target:  5'- --uGACAGAAGCCCCGUUaCCGa--- -3'
miRNA:   3'- acuCUGUCUUCGGGGUAAcGGCagaa -5'
8089 5' -54.3 NC_001978.2 + 1839 0.74 0.24125
Target:  5'- aGcGGCAGGguucaAGCCCUGUUGCCGUCc- -3'
miRNA:   3'- aCuCUGUCU-----UCGGGGUAACGGCAGaa -5'
8089 5' -54.3 NC_001978.2 + 9537 1.06 0.001105
Target:  5'- cUGAGACAGAAGCCCCAUUGCCGUCUUa -3'
miRNA:   3'- -ACUCUGUCUUCGGGGUAACGGCAGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.