miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
809 3' -46.2 NC_000866.4 + 82671 0.66 0.999945
Target:  5'- -uUGCuUCUGGc-GAugUUACAGAAa -3'
miRNA:   3'- ucACGuAGACCuuCUugAAUGUCUUa -5'
809 3' -46.2 NC_000866.4 + 74437 0.67 0.999831
Target:  5'- -aUGCG-CUGGAAGAACUU-CAGc-- -3'
miRNA:   3'- ucACGUaGACCUUCUUGAAuGUCuua -5'
809 3' -46.2 NC_000866.4 + 137175 0.81 0.692984
Target:  5'- uAGUGCAUCUGGAAGuAACcaauCAGAAUa -3'
miRNA:   3'- -UCACGUAGACCUUC-UUGaau-GUCUUA- -5'
809 3' -46.2 NC_000866.4 + 137421 1.06 0.034798
Target:  5'- aAGUGCAUCUGGAAGAACUUACAGAAUu -3'
miRNA:   3'- -UCACGUAGACCUUCUUGAAUGUCUUA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.