miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8090 3' -54.7 NC_001978.2 + 16456 0.66 0.661318
Target:  5'- aCCCGguugcgAAGUAUCUGACuCCGCAGCg- -3'
miRNA:   3'- cGGGUa-----UUCGUGGGUUG-GGCGUUGgu -5'
8090 3' -54.7 NC_001978.2 + 30372 0.67 0.581955
Target:  5'- cGCgCcgAAGcCGCCCGGCUCGCGuggcaggguGCCGu -3'
miRNA:   3'- -CGgGuaUUC-GUGGGUUGGGCGU---------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 732 0.67 0.609091
Target:  5'- cGCCCuuguuggcGUAGGCGCCgAaggugaagccgacgaGCCgGUAACCGu -3'
miRNA:   3'- -CGGG--------UAUUCGUGGgU---------------UGGgCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 19862 0.66 0.6159
Target:  5'- uGCgCAUuGGCGCCguGCCgGgGGCCGa -3'
miRNA:   3'- -CGgGUAuUCGUGGguUGGgCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 23800 0.66 0.6159
Target:  5'- uGCCgacuaGUGgcAGCGCUCGACCCgGCGucGCCGg -3'
miRNA:   3'- -CGGg----UAU--UCGUGGGUUGGG-CGU--UGGU- -5'
8090 3' -54.7 NC_001978.2 + 36905 0.66 0.6159
Target:  5'- uGCCgGUcGGCACCCugccACCUGCGGaagaaguucgcCCAg -3'
miRNA:   3'- -CGGgUAuUCGUGGGu---UGGGCGUU-----------GGU- -5'
8090 3' -54.7 NC_001978.2 + 28053 0.66 0.6159
Target:  5'- aCCCGUcGGCGCCgGACaCUcaggGCGACCu -3'
miRNA:   3'- cGGGUAuUCGUGGgUUG-GG----CGUUGGu -5'
8090 3' -54.7 NC_001978.2 + 30847 0.66 0.649978
Target:  5'- aGUCCAUGGGCGCCacuCagCGCGACa- -3'
miRNA:   3'- -CGGGUAUUCGUGGguuGg-GCGUUGgu -5'
8090 3' -54.7 NC_001978.2 + 34180 0.66 0.649978
Target:  5'- cGCCgucgaGUGcGCGCCCAACUC-CGACUAu -3'
miRNA:   3'- -CGGg----UAUuCGUGGGUUGGGcGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 7885 0.67 0.567354
Target:  5'- uUCCGUGuGCucgACCCGggcgacggcgugacGCCCGCAAUCAa -3'
miRNA:   3'- cGGGUAUuCG---UGGGU--------------UGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 33206 0.67 0.55953
Target:  5'- -gCCGUA-GCGCCCAACuCCGUucaggacauGCCGa -3'
miRNA:   3'- cgGGUAUuCGUGGGUUG-GGCGu--------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 34660 0.68 0.548407
Target:  5'- aGCCCcguuGCACCCGGCaCgguucggagUGCGACCGg -3'
miRNA:   3'- -CGGGuauuCGUGGGUUG-G---------GCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 210 0.72 0.329145
Target:  5'- cCCCGUcguguacgagggucGAGCGCCCcguguGCCCGCGcACCu -3'
miRNA:   3'- cGGGUA--------------UUCGUGGGu----UGGGCGU-UGGu -5'
8090 3' -54.7 NC_001978.2 + 31401 0.71 0.348577
Target:  5'- aGCUCAgcggaaGAGCGCCgCAACCCGgGACgCGa -3'
miRNA:   3'- -CGGGUa-----UUCGUGG-GUUGGGCgUUG-GU- -5'
8090 3' -54.7 NC_001978.2 + 6410 0.71 0.376039
Target:  5'- uGCCCAggcugggggaaauuGGCGCCCGACgUCGCuGCCu -3'
miRNA:   3'- -CGGGUau------------UCGUGGGUUG-GGCGuUGGu -5'
8090 3' -54.7 NC_001978.2 + 35643 0.7 0.393577
Target:  5'- gGCUUGUAcAGCGCCCAGCUCGaccccgaaGACCGg -3'
miRNA:   3'- -CGGGUAU-UCGUGGGUUGGGCg-------UUGGU- -5'
8090 3' -54.7 NC_001978.2 + 36665 0.7 0.406835
Target:  5'- aGCCC-UGAGCGCCCcugagccggucgcggAACCUG-AGCCGg -3'
miRNA:   3'- -CGGGuAUUCGUGGG---------------UUGGGCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 805 0.69 0.472915
Target:  5'- cGCCCAggcgccgGAGCACUCGACCCauuCGgacACCu -3'
miRNA:   3'- -CGGGUa------UUCGUGGGUUGGGc--GU---UGGu -5'
8090 3' -54.7 NC_001978.2 + 39206 0.69 0.472915
Target:  5'- -aCCGcuucAAGCGCCUggGACCCGgCAACCGu -3'
miRNA:   3'- cgGGUa---UUCGUGGG--UUGGGC-GUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 21542 0.68 0.504691
Target:  5'- cGCCU--GAGCGCCCGucUCCGCccCCAa -3'
miRNA:   3'- -CGGGuaUUCGUGGGUu-GGGCGuuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.