Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8090 | 3' | -54.7 | NC_001978.2 | + | 12208 | 0.66 | 0.6159 |
Target: 5'- uGCCCccgAUAAGgACCguGCcggagccgaCCGCAACCGu -3' miRNA: 3'- -CGGG---UAUUCgUGGguUG---------GGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33235 | 0.66 | 0.6159 |
Target: 5'- -----cGAGCACCCGACCgGCGAacucCCGa -3' miRNA: 3'- cggguaUUCGUGGGUUGGgCGUU----GGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 9162 | 0.67 | 0.604556 |
Target: 5'- aCCCA--GGCGCUUAGCCU-CAGCCGg -3' miRNA: 3'- cGGGUauUCGUGGGUUGGGcGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33504 | 0.67 | 0.604556 |
Target: 5'- gGCUCAgc-GCGCggucuuucuUCGGCCCGUAGCCGu -3' miRNA: 3'- -CGGGUauuCGUG---------GGUUGGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 15998 | 0.67 | 0.570716 |
Target: 5'- cGCCCGUc-GCGCCCGugUCGCccuugucGCCc -3' miRNA: 3'- -CGGGUAuuCGUGGGUugGGCGu------UGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 3227 | 0.67 | 0.569595 |
Target: 5'- gGCCCAUAc-CGCCCGGCUCaGCGuucggauagucgaGCCAu -3' miRNA: 3'- -CGGGUAUucGUGGGUUGGG-CGU-------------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 40866 | 0.67 | 0.566235 |
Target: 5'- cGCCCGgcuucuuauugaaGAGCGCUCGACCCuCAaugacGCCGa -3' miRNA: 3'- -CGGGUa------------UUCGUGGGUUGGGcGU-----UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 25869 | 0.67 | 0.563998 |
Target: 5'- aGCCCuucagaccuuCGgCCAGCuCCGCGACCAa -3' miRNA: 3'- -CGGGuauuc-----GUgGGUUG-GGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 1220 | 0.65 | 0.669239 |
Target: 5'- aGCCCcgAAGaugaacgccaacgcCAcCCCGACCCGguACUu -3' miRNA: 3'- -CGGGuaUUC--------------GU-GGGUUGGGCguUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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