miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8091 3' -56 NC_001978.2 + 413 0.68 0.426368
Target:  5'- gGCGCGACGGUCGuGAAGCucgcaguaacGCAagaucacguuccGGUCCGu -3'
miRNA:   3'- -CGUGUUGCCGGC-CUUCG----------UGU------------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 1008 0.7 0.361477
Target:  5'- aGCGCGACGaagccGCCGG-AGUcgACAAGCCg- -3'
miRNA:   3'- -CGUGUUGC-----CGGCCuUCG--UGUUCGGgu -5'
8091 3' -56 NC_001978.2 + 1843 0.68 0.456219
Target:  5'- aCACAGCGGCaGGGuu--CAAGCCCu -3'
miRNA:   3'- cGUGUUGCCGgCCUucguGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 1984 0.66 0.595095
Target:  5'- cGCACAguGCGGCaaaGGGuccgucgGGguCGGGUCCGg -3'
miRNA:   3'- -CGUGU--UGCCGg--CCU-------UCguGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 2101 0.66 0.573879
Target:  5'- -gGCAGCGGCacaGcGAAGCACugAAGCUa- -3'
miRNA:   3'- cgUGUUGCCGg--C-CUUCGUG--UUCGGgu -5'
8091 3' -56 NC_001978.2 + 2898 0.67 0.529871
Target:  5'- uGCACucuuCGGgCGGggGCACu--CCCc -3'
miRNA:   3'- -CGUGuu--GCCgGCCuuCGUGuucGGGu -5'
8091 3' -56 NC_001978.2 + 2925 0.77 0.127151
Target:  5'- aGCGCucGACGGCauuGAGGCGCGAGCCUg -3'
miRNA:   3'- -CGUG--UUGCCGgc-CUUCGUGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 3072 0.68 0.425393
Target:  5'- aGCGCGucauGCGgagugaccgucucGCCGGAAGCcGCAAcggcGCCCAg -3'
miRNA:   3'- -CGUGU----UGC-------------CGGCCUUCG-UGUU----CGGGU- -5'
8091 3' -56 NC_001978.2 + 4205 0.71 0.281314
Target:  5'- gGCuCAAUGGCUGGggGagcggggGCAGGCUCAg -3'
miRNA:   3'- -CGuGUUGCCGGCCuuCg------UGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 4525 0.71 0.303783
Target:  5'- uCGCAGCGuGCCGGAAG-ACGugcGCCCc -3'
miRNA:   3'- cGUGUUGC-CGGCCUUCgUGUu--CGGGu -5'
8091 3' -56 NC_001978.2 + 6253 0.7 0.370317
Target:  5'- cGUACuGCGGUCGGAAGUgggACAcGGCCgAa -3'
miRNA:   3'- -CGUGuUGCCGGCCUUCG---UGU-UCGGgU- -5'
8091 3' -56 NC_001978.2 + 6846 0.7 0.33585
Target:  5'- -gACGuACGGCCGGAgucGGCuucuguCGAGUCCAc -3'
miRNA:   3'- cgUGU-UGCCGGCCU---UCGu-----GUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 7168 0.67 0.497691
Target:  5'- uGCAUAcCGGcCCGGAAGCcgACAgacucaaucGGCUCGa -3'
miRNA:   3'- -CGUGUuGCC-GGCCUUCG--UGU---------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 8812 0.68 0.426368
Target:  5'- aGCGCGcCGGUCGGGggcgaagcgggGGCACuGAGCgCCGc -3'
miRNA:   3'- -CGUGUuGCCGGCCU-----------UCGUG-UUCG-GGU- -5'
8091 3' -56 NC_001978.2 + 9268 0.69 0.388435
Target:  5'- uCGCucCGGCCGGA---ACGAGCCCc -3'
miRNA:   3'- cGUGuuGCCGGCCUucgUGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 10141 0.7 0.351925
Target:  5'- aGCGCGACGGCgGuaaucgaauccacGAAGCA--AGCCCu -3'
miRNA:   3'- -CGUGUUGCCGgC-------------CUUCGUguUCGGGu -5'
8091 3' -56 NC_001978.2 + 11560 0.7 0.352786
Target:  5'- cGCACGgugACGGuCCGG-AGCuACAAGCgCGa -3'
miRNA:   3'- -CGUGU---UGCC-GGCCuUCG-UGUUCGgGU- -5'
8091 3' -56 NC_001978.2 + 11670 1.1 0.000418
Target:  5'- gGCACAACGGCCGGAAGCACAAGCCCAg -3'
miRNA:   3'- -CGUGUUGCCGGCCUUCGUGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 12125 0.69 0.416679
Target:  5'- cGCACGguuGCGGUCGGcuccGGCAC-GGUCCu -3'
miRNA:   3'- -CGUGU---UGCCGGCCu---UCGUGuUCGGGu -5'
8091 3' -56 NC_001978.2 + 13222 0.68 0.476732
Target:  5'- cCACAA-GGCCGGAAcGCcCAGGCUgAa -3'
miRNA:   3'- cGUGUUgCCGGCCUU-CGuGUUCGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.