miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8091 3' -56 NC_001978.2 + 18822 0.67 0.491359
Target:  5'- cGCGCGGCGuuccccgcuaucgacGCUGcGGAGCGCcuGAGCCUg -3'
miRNA:   3'- -CGUGUUGC---------------CGGC-CUUCGUG--UUCGGGu -5'
8091 3' -56 NC_001978.2 + 12125 0.69 0.416679
Target:  5'- cGCACGguuGCGGUCGGcuccGGCAC-GGUCCu -3'
miRNA:   3'- -CGUGU---UGCCGGCCu---UCGUGuUCGGGu -5'
8091 3' -56 NC_001978.2 + 37501 0.68 0.423447
Target:  5'- uGCGCAugaagcuugugaccgAUGGCCGGuuugaagucgagcggGGGCGCAccugggaAGCCCGc -3'
miRNA:   3'- -CGUGU---------------UGCCGGCC---------------UUCGUGU-------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 8812 0.68 0.426368
Target:  5'- aGCGCGcCGGUCGGGggcgaagcgggGGCACuGAGCgCCGc -3'
miRNA:   3'- -CGUGUuGCCGGCCU-----------UCGUG-UUCG-GGU- -5'
8091 3' -56 NC_001978.2 + 26789 0.68 0.436191
Target:  5'- aGgGCAACGG-CGGggGCAUu--CCCAa -3'
miRNA:   3'- -CgUGUUGCCgGCCuuCGUGuucGGGU- -5'
8091 3' -56 NC_001978.2 + 20681 0.68 0.456219
Target:  5'- cGUugAGCGGCaGGggGCGCAcaacuCCCu -3'
miRNA:   3'- -CGugUUGCCGgCCuuCGUGUuc---GGGu -5'
8091 3' -56 NC_001978.2 + 32991 0.68 0.456219
Target:  5'- cGUACGAC-GCUGGGgugaAGCuucuuCGAGCCCGg -3'
miRNA:   3'- -CGUGUUGcCGGCCU----UCGu----GUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 37415 0.68 0.466417
Target:  5'- gGCACuGACcGCCGGAGuGCGCuccGCCUAc -3'
miRNA:   3'- -CGUG-UUGcCGGCCUU-CGUGuu-CGGGU- -5'
8091 3' -56 NC_001978.2 + 28084 0.68 0.476732
Target:  5'- -aACGGCGGucuuCCGGucGCugGGGCUCAc -3'
miRNA:   3'- cgUGUUGCC----GGCCuuCGugUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 38961 0.69 0.38568
Target:  5'- cGCGCAACGGCCGaauGGUcaaugucgucaucaACAAGCUUg -3'
miRNA:   3'- -CGUGUUGCCGGCcu-UCG--------------UGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 6253 0.7 0.370317
Target:  5'- cGUACuGCGGUCGGAAGUgggACAcGGCCgAa -3'
miRNA:   3'- -CGUGuUGCCGGCCUUCG---UGU-UCGGgU- -5'
8091 3' -56 NC_001978.2 + 11560 0.7 0.352786
Target:  5'- cGCACGgugACGGuCCGG-AGCuACAAGCgCGa -3'
miRNA:   3'- -CGUGU---UGCC-GGCCuUCG-UGUUCGgGU- -5'
8091 3' -56 NC_001978.2 + 2925 0.77 0.127151
Target:  5'- aGCGCucGACGGCauuGAGGCGCGAGCCUg -3'
miRNA:   3'- -CGUG--UUGCCGgc-CUUCGUGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 13810 0.75 0.168631
Target:  5'- -aGCGACGGCCGGAGccGCACccguGGCCa- -3'
miRNA:   3'- cgUGUUGCCGGCCUU--CGUGu---UCGGgu -5'
8091 3' -56 NC_001978.2 + 26196 0.73 0.215919
Target:  5'- gGCAUggacuGACGGCCGGAucaAGUACGcGUCCGg -3'
miRNA:   3'- -CGUG-----UUGCCGGCCU---UCGUGUuCGGGU- -5'
8091 3' -56 NC_001978.2 + 18954 0.71 0.311574
Target:  5'- gGCACGcUGaGCCGGAcgcGCACAAGUCUg -3'
miRNA:   3'- -CGUGUuGC-CGGCCUu--CGUGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 35475 0.7 0.327607
Target:  5'- cGCAgCAACGGCguucggccUGGGAGCGCucGCCUu -3'
miRNA:   3'- -CGU-GUUGCCG--------GCCUUCGUGuuCGGGu -5'
8091 3' -56 NC_001978.2 + 6846 0.7 0.33585
Target:  5'- -gACGuACGGCCGGAgucGGCuucuguCGAGUCCAc -3'
miRNA:   3'- cgUGU-UGCCGGCCU---UCGu-----GUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 20903 0.7 0.344243
Target:  5'- cCGCuACGGCCGGAcggAGCuu--GCCCGg -3'
miRNA:   3'- cGUGuUGCCGGCCU---UCGuguuCGGGU- -5'
8091 3' -56 NC_001978.2 + 10141 0.7 0.351925
Target:  5'- aGCGCGACGGCgGuaaucgaauccacGAAGCA--AGCCCu -3'
miRNA:   3'- -CGUGUUGCCGgC-------------CUUCGUguUCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.