miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8092 3' -54 NC_001978.2 + 36695 0.66 0.742831
Target:  5'- aCCUgAGcCGguaccggcggagccUGAGCCCGUcacGGAGCCGg -3'
miRNA:   3'- -GGAgUUaGC--------------GCUCGGGCAa--CUUCGGC- -5'
8092 3' -54 NC_001978.2 + 1678 0.66 0.735338
Target:  5'- ------aCGCGAGCCCGaagcUUGccGCCGu -3'
miRNA:   3'- ggaguuaGCGCUCGGGC----AACuuCGGC- -5'
8092 3' -54 NC_001978.2 + 22891 0.66 0.731032
Target:  5'- gCUCA-UCGUGAcGCCCGUgacgcgcgacuagGGuccGGCCGg -3'
miRNA:   3'- gGAGUuAGCGCU-CGGGCAa------------CU---UCGGC- -5'
8092 3' -54 NC_001978.2 + 28366 0.66 0.724542
Target:  5'- aCUCAAgaucaagCGCGAGCCCGgcgcGuuGCa- -3'
miRNA:   3'- gGAGUUa------GCGCUCGGGCaa--CuuCGgc -5'
8092 3' -54 NC_001978.2 + 33503 0.66 0.724542
Target:  5'- gCUCAGcgCGCGgucuuucuucGGCCCGU---AGCCGu -3'
miRNA:   3'- gGAGUUa-GCGC----------UCGGGCAacuUCGGC- -5'
8092 3' -54 NC_001978.2 + 16568 0.67 0.64696
Target:  5'- --aCGGUCGUcGGCuCCGUgauguUGAAGCCGu -3'
miRNA:   3'- ggaGUUAGCGcUCG-GGCA-----ACUUCGGC- -5'
8092 3' -54 NC_001978.2 + 31636 0.67 0.63573
Target:  5'- uCCUCAAcgccuUCGCacguguacGGGCCgGacggGAAGCCGg -3'
miRNA:   3'- -GGAGUU-----AGCG--------CUCGGgCaa--CUUCGGC- -5'
8092 3' -54 NC_001978.2 + 794 0.68 0.61327
Target:  5'- gCC-CAGUCGCGcGCCCa--GgcGCCGg -3'
miRNA:   3'- -GGaGUUAGCGCuCGGGcaaCuuCGGC- -5'
8092 3' -54 NC_001978.2 + 25000 0.68 0.61327
Target:  5'- cCUUCGGUC-CGaAGCCCGccGAcugAGCCGg -3'
miRNA:   3'- -GGAGUUAGcGC-UCGGGCaaCU---UCGGC- -5'
8092 3' -54 NC_001978.2 + 14271 0.68 0.61327
Target:  5'- -gUCAcguUCGCGAGCCCGcaGGAugaccacacguuGCCGg -3'
miRNA:   3'- ggAGUu--AGCGCUCGGGCaaCUU------------CGGC- -5'
8092 3' -54 NC_001978.2 + 12353 1.11 0.000772
Target:  5'- aCCUCAAUCGCGAGCCCGUUGAAGCCGu -3'
miRNA:   3'- -GGAGUUAGCGCUCGGGCAACUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.