miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 12962 1.13 0.000438
Target:  5'- cAGGUUCGCAAUCACGCCGUCGCACCCg -3'
miRNA:   3'- -UCCAAGCGUUAGUGCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 36324 0.77 0.160026
Target:  5'- cGGGUUCGCAcaauCGCCuUCGUGCCCa -3'
miRNA:   3'- -UCCAAGCGUuaguGCGGcAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 33185 0.76 0.178745
Target:  5'- cGGGUgcUCGaccaccuUCACGCCGUaGCGCCCa -3'
miRNA:   3'- -UCCA--AGCguu----AGUGCGGCAgCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 26021 0.76 0.18372
Target:  5'- cGGG-UCGCGcUCACGCCagucaguaagGUCGuCACCCg -3'
miRNA:   3'- -UCCaAGCGUuAGUGCGG----------CAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 10843 0.75 0.218527
Target:  5'- cGGagUCGCccaguucagaagaucGAUCACGCCGUUgauaGCGCCCu -3'
miRNA:   3'- uCCa-AGCG---------------UUAGUGCGGCAG----CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 16016 0.74 0.240488
Target:  5'- cGGGaaccgUCG-AGUCgGCGcCCGUCGCGCCCg -3'
miRNA:   3'- -UCCa----AGCgUUAG-UGC-GGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 40958 0.73 0.274007
Target:  5'- cGGGcggUCGCuucuaGCGCUGcCGCGCCCa -3'
miRNA:   3'- -UCCa--AGCGuuag-UGCGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 4686 0.73 0.281144
Target:  5'- aGGGUcgUCGUcGUC-CGcCCGUCGCuGCCCa -3'
miRNA:   3'- -UCCA--AGCGuUAGuGC-GGCAGCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 6699 0.73 0.288428
Target:  5'- aAGG-UCGUcGUCua-CCGUCGCGCCCa -3'
miRNA:   3'- -UCCaAGCGuUAGugcGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 2643 0.72 0.303439
Target:  5'- gGGGcgCGCGcAUCacgaaggaacacGCGUCGUCGCGCCg -3'
miRNA:   3'- -UCCaaGCGU-UAG------------UGCGGCAGCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 25637 0.72 0.316665
Target:  5'- cAGGUcaCGCcccugggcgccacgGGUCACGCCGUCGaauCCCu -3'
miRNA:   3'- -UCCAa-GCG--------------UUAGUGCGGCAGCgu-GGG- -5'
8093 3' -55.1 NC_001978.2 + 7965 0.72 0.327069
Target:  5'- ---aUUGCGggcGUCACGCCGUCGC-CCg -3'
miRNA:   3'- uccaAGCGU---UAGUGCGGCAGCGuGGg -5'
8093 3' -55.1 NC_001978.2 + 11393 0.72 0.335243
Target:  5'- cAGGgcuucCGUGAacUCAgCGCgGUCGCGCCCg -3'
miRNA:   3'- -UCCaa---GCGUU--AGU-GCGgCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 413 0.72 0.343565
Target:  5'- aGGGUUacaaCGGUCA-GCCGgucgCGCACCCg -3'
miRNA:   3'- -UCCAAgc--GUUAGUgCGGCa---GCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 343 0.71 0.369415
Target:  5'- -cGUUacUGCGAgcuUCACGaCCGUCGCGCCg -3'
miRNA:   3'- ucCAA--GCGUU---AGUGC-GGCAGCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 16991 0.71 0.369415
Target:  5'- uGGUUgGCAAgCACGUCGgaCGCugCCu -3'
miRNA:   3'- uCCAAgCGUUaGUGCGGCa-GCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 6736 0.71 0.387373
Target:  5'- uGGUUgGCu-UCGCGCCGgagCGCAUagCCa -3'
miRNA:   3'- uCCAAgCGuuAGUGCGGCa--GCGUG--GG- -5'
8093 3' -55.1 NC_001978.2 + 6924 0.7 0.396565
Target:  5'- cGGGUgCGCGGUCGCGUCuaucagUGaCACCCg -3'
miRNA:   3'- -UCCAaGCGUUAGUGCGGca----GC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 31005 0.7 0.405896
Target:  5'- aGGcGUUCGCuaa-GCGCUauGUCGCugCCg -3'
miRNA:   3'- -UC-CAAGCGuuagUGCGG--CAGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 16255 0.7 0.415364
Target:  5'- cGGGUcCGaCGGUCACGCUuacCGCugCCg -3'
miRNA:   3'- -UCCAaGC-GUUAGUGCGGca-GCGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.