Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8093 | 3' | -55.1 | NC_001978.2 | + | 343 | 0.71 | 0.369415 |
Target: 5'- -cGUUacUGCGAgcuUCACGaCCGUCGCGCCg -3' miRNA: 3'- ucCAA--GCGUU---AGUGC-GGCAGCGUGGg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 413 | 0.72 | 0.343565 |
Target: 5'- aGGGUUacaaCGGUCA-GCCGgucgCGCACCCg -3' miRNA: 3'- -UCCAAgc--GUUAGUgCGGCa---GCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 954 | 0.68 | 0.527542 |
Target: 5'- cGGcuucgUCGCGcuUCAUGCgGUCGCGCUUc -3' miRNA: 3'- uCCa----AGCGUu-AGUGCGgCAGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 2643 | 0.72 | 0.303439 |
Target: 5'- gGGGcgCGCGcAUCacgaaggaacacGCGUCGUCGCGCCg -3' miRNA: 3'- -UCCaaGCGU-UAG------------UGCGGCAGCGUGGg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 3391 | 0.67 | 0.56787 |
Target: 5'- uGGGUUgGU--UCACGCCG-CGCGacguccuucacauuCCCg -3' miRNA: 3'- -UCCAAgCGuuAGUGCGGCaGCGU--------------GGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 3738 | 0.68 | 0.542689 |
Target: 5'- cAGGUUCcggaAAUCGCgcgaaucuuuggcguGCCGcCGCACCUg -3' miRNA: 3'- -UCCAAGcg--UUAGUG---------------CGGCaGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 4254 | 0.67 | 0.571177 |
Target: 5'- gAGcUUCGUuu---CGCCGUCGgCACCCu -3' miRNA: 3'- -UCcAAGCGuuaguGCGGCAGC-GUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 4385 | 0.7 | 0.415364 |
Target: 5'- uGGg--GCAGggGCGCCGUCGCugCg -3' miRNA: 3'- uCCaagCGUUagUGCGGCAGCGugGg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 4686 | 0.73 | 0.281144 |
Target: 5'- aGGGUcgUCGUcGUC-CGcCCGUCGCuGCCCa -3' miRNA: 3'- -UCCA--AGCGuUAGuGC-GGCAGCG-UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 5285 | 0.7 | 0.4347 |
Target: 5'- cGGGUUaccgGCcuUCGUGCCGUCGCGCUUc -3' miRNA: 3'- -UCCAAg---CGuuAGUGCGGCAGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 5393 | 0.7 | 0.4347 |
Target: 5'- cGGGUUCGC-GUCggACGUCGUgaaggucgaCGCGCCa -3' miRNA: 3'- -UCCAAGCGuUAG--UGCGGCA---------GCGUGGg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 5914 | 0.67 | 0.615627 |
Target: 5'- cGGGUUCGCuu---CGCCGguUCGC-UCCg -3' miRNA: 3'- -UCCAAGCGuuaguGCGGC--AGCGuGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 6699 | 0.73 | 0.288428 |
Target: 5'- aAGG-UCGUcGUCua-CCGUCGCGCCCa -3' miRNA: 3'- -UCCaAGCGuUAGugcGGCAGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 6736 | 0.71 | 0.387373 |
Target: 5'- uGGUUgGCu-UCGCGCCGgagCGCAUagCCa -3' miRNA: 3'- uCCAAgCGuuAGUGCGGCa--GCGUG--GG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 6924 | 0.7 | 0.396565 |
Target: 5'- cGGGUgCGCGGUCGCGUCuaucagUGaCACCCg -3' miRNA: 3'- -UCCAaGCGUUAGUGCGGca----GC-GUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 7658 | 0.66 | 0.649151 |
Target: 5'- cGGUUCGUAAcgCGCuGCCGaCGUACg- -3' miRNA: 3'- uCCAAGCGUUa-GUG-CGGCaGCGUGgg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 7965 | 0.72 | 0.327069 |
Target: 5'- ---aUUGCGggcGUCACGCCGUCGC-CCg -3' miRNA: 3'- uccaAGCGU---UAGUGCGGCAGCGuGGg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 8342 | 0.66 | 0.649151 |
Target: 5'- cGGUUCGCAGagAUGuuG-CGCuuCCg -3' miRNA: 3'- uCCAAGCGUUagUGCggCaGCGugGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 9878 | 0.66 | 0.6268 |
Target: 5'- --cUUCGC---CGCGCCGUCGaccuuGCCCa -3' miRNA: 3'- uccAAGCGuuaGUGCGGCAGCg----UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 10219 | 0.68 | 0.516819 |
Target: 5'- aGGGcUUGCuucguggauucGAUUAcCGCCGUCGCGCUUg -3' miRNA: 3'- -UCCaAGCG-----------UUAGU-GCGGCAGCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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