miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 343 0.71 0.369415
Target:  5'- -cGUUacUGCGAgcuUCACGaCCGUCGCGCCg -3'
miRNA:   3'- ucCAA--GCGUU---AGUGC-GGCAGCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 413 0.72 0.343565
Target:  5'- aGGGUUacaaCGGUCA-GCCGgucgCGCACCCg -3'
miRNA:   3'- -UCCAAgc--GUUAGUgCGGCa---GCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 954 0.68 0.527542
Target:  5'- cGGcuucgUCGCGcuUCAUGCgGUCGCGCUUc -3'
miRNA:   3'- uCCa----AGCGUu-AGUGCGgCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 2643 0.72 0.303439
Target:  5'- gGGGcgCGCGcAUCacgaaggaacacGCGUCGUCGCGCCg -3'
miRNA:   3'- -UCCaaGCGU-UAG------------UGCGGCAGCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 3391 0.67 0.56787
Target:  5'- uGGGUUgGU--UCACGCCG-CGCGacguccuucacauuCCCg -3'
miRNA:   3'- -UCCAAgCGuuAGUGCGGCaGCGU--------------GGG- -5'
8093 3' -55.1 NC_001978.2 + 3738 0.68 0.542689
Target:  5'- cAGGUUCcggaAAUCGCgcgaaucuuuggcguGCCGcCGCACCUg -3'
miRNA:   3'- -UCCAAGcg--UUAGUG---------------CGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 4254 0.67 0.571177
Target:  5'- gAGcUUCGUuu---CGCCGUCGgCACCCu -3'
miRNA:   3'- -UCcAAGCGuuaguGCGGCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 4385 0.7 0.415364
Target:  5'- uGGg--GCAGggGCGCCGUCGCugCg -3'
miRNA:   3'- uCCaagCGUUagUGCGGCAGCGugGg -5'
8093 3' -55.1 NC_001978.2 + 4686 0.73 0.281144
Target:  5'- aGGGUcgUCGUcGUC-CGcCCGUCGCuGCCCa -3'
miRNA:   3'- -UCCA--AGCGuUAGuGC-GGCAGCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 5285 0.7 0.4347
Target:  5'- cGGGUUaccgGCcuUCGUGCCGUCGCGCUUc -3'
miRNA:   3'- -UCCAAg---CGuuAGUGCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 5393 0.7 0.4347
Target:  5'- cGGGUUCGC-GUCggACGUCGUgaaggucgaCGCGCCa -3'
miRNA:   3'- -UCCAAGCGuUAG--UGCGGCA---------GCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 5914 0.67 0.615627
Target:  5'- cGGGUUCGCuu---CGCCGguUCGC-UCCg -3'
miRNA:   3'- -UCCAAGCGuuaguGCGGC--AGCGuGGG- -5'
8093 3' -55.1 NC_001978.2 + 6699 0.73 0.288428
Target:  5'- aAGG-UCGUcGUCua-CCGUCGCGCCCa -3'
miRNA:   3'- -UCCaAGCGuUAGugcGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 6736 0.71 0.387373
Target:  5'- uGGUUgGCu-UCGCGCCGgagCGCAUagCCa -3'
miRNA:   3'- uCCAAgCGuuAGUGCGGCa--GCGUG--GG- -5'
8093 3' -55.1 NC_001978.2 + 6924 0.7 0.396565
Target:  5'- cGGGUgCGCGGUCGCGUCuaucagUGaCACCCg -3'
miRNA:   3'- -UCCAaGCGUUAGUGCGGca----GC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 7658 0.66 0.649151
Target:  5'- cGGUUCGUAAcgCGCuGCCGaCGUACg- -3'
miRNA:   3'- uCCAAGCGUUa-GUG-CGGCaGCGUGgg -5'
8093 3' -55.1 NC_001978.2 + 7965 0.72 0.327069
Target:  5'- ---aUUGCGggcGUCACGCCGUCGC-CCg -3'
miRNA:   3'- uccaAGCGU---UAGUGCGGCAGCGuGGg -5'
8093 3' -55.1 NC_001978.2 + 8342 0.66 0.649151
Target:  5'- cGGUUCGCAGagAUGuuG-CGCuuCCg -3'
miRNA:   3'- uCCAAGCGUUagUGCggCaGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 9878 0.66 0.6268
Target:  5'- --cUUCGC---CGCGCCGUCGaccuuGCCCa -3'
miRNA:   3'- uccAAGCGuuaGUGCGGCAGCg----UGGG- -5'
8093 3' -55.1 NC_001978.2 + 10219 0.68 0.516819
Target:  5'- aGGGcUUGCuucguggauucGAUUAcCGCCGUCGCGCUUg -3'
miRNA:   3'- -UCCaAGCG-----------UUAGU-GCGGCAGCGUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.