miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 3391 0.67 0.56787
Target:  5'- uGGGUUgGU--UCACGCCG-CGCGacguccuucacauuCCCg -3'
miRNA:   3'- -UCCAAgCGuuAGUGCGGCaGCGU--------------GGG- -5'
8093 3' -55.1 NC_001978.2 + 29426 0.69 0.495646
Target:  5'- gGGGgUCGCuguAUgGCGCCGaCGUgugACCCu -3'
miRNA:   3'- -UCCaAGCGu--UAgUGCGGCaGCG---UGGG- -5'
8093 3' -55.1 NC_001978.2 + 12846 0.68 0.515752
Target:  5'- cGGGUggcgucggccguaUCGCGcUUAUGUCGUCGgGCUCg -3'
miRNA:   3'- -UCCA-------------AGCGUuAGUGCGGCAGCgUGGG- -5'
8093 3' -55.1 NC_001978.2 + 22738 0.68 0.526466
Target:  5'- cGGcgUCGUGuucGUCGCuGCCGUCGUcgggcucGCCCu -3'
miRNA:   3'- uCCa-AGCGU---UAGUG-CGGCAGCG-------UGGG- -5'
8093 3' -55.1 NC_001978.2 + 954 0.68 0.527542
Target:  5'- cGGcuucgUCGCGcuUCAUGCgGUCGCGCUUc -3'
miRNA:   3'- uCCa----AGCGUu-AGUGCGgCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 16695 0.68 0.538346
Target:  5'- cGGUcaaCGCAuGUCgGCGCCGUucCGCuGCCCa -3'
miRNA:   3'- uCCAa--GCGU-UAG-UGCGGCA--GCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 3738 0.68 0.542689
Target:  5'- cAGGUUCcggaAAUCGCgcgaaucuuuggcguGCCGcCGCACCUg -3'
miRNA:   3'- -UCCAAGcg--UUAGUG---------------CGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 36891 0.68 0.549225
Target:  5'- gAGG-UCGCugcCGCuGCCgGUCGgCACCCu -3'
miRNA:   3'- -UCCaAGCGuuaGUG-CGG-CAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 20776 0.68 0.560171
Target:  5'- cGGacCGCAaagaGUCccuUGCCGUCGCGUCCg -3'
miRNA:   3'- uCCaaGCGU----UAGu--GCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 18351 0.69 0.495646
Target:  5'- aAGG-UCGUcacGUC-CGUCGUCGuCGCCCu -3'
miRNA:   3'- -UCCaAGCGu--UAGuGCGGCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34138 0.7 0.4347
Target:  5'- cGGGUgUGC-GUC-CGCCGgagCGUGCCCa -3'
miRNA:   3'- -UCCAaGCGuUAGuGCGGCa--GCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34637 0.7 0.415364
Target:  5'- cGGGUUCGagccgACGCCGacugagccccgUUGCACCCg -3'
miRNA:   3'- -UCCAAGCguuagUGCGGC-----------AGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 40958 0.73 0.274007
Target:  5'- cGGGcggUCGCuucuaGCGCUGcCGCGCCCa -3'
miRNA:   3'- -UCCa--AGCGuuag-UGCGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 2643 0.72 0.303439
Target:  5'- gGGGcgCGCGcAUCacgaaggaacacGCGUCGUCGCGCCg -3'
miRNA:   3'- -UCCaaGCGU-UAG------------UGCGGCAGCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 413 0.72 0.343565
Target:  5'- aGGGUUacaaCGGUCA-GCCGgucgCGCACCCg -3'
miRNA:   3'- -UCCAAgc--GUUAGUgCGGCa---GCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 343 0.71 0.369415
Target:  5'- -cGUUacUGCGAgcuUCACGaCCGUCGCGCCg -3'
miRNA:   3'- ucCAA--GCGUU---AGUGC-GGCAGCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 6924 0.7 0.396565
Target:  5'- cGGGUgCGCGGUCGCGUCuaucagUGaCACCCg -3'
miRNA:   3'- -UCCAaGCGUUAGUGCGGca----GC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 31005 0.7 0.405896
Target:  5'- aGGcGUUCGCuaa-GCGCUauGUCGCugCCg -3'
miRNA:   3'- -UC-CAAGCGuuagUGCGG--CAGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 4385 0.7 0.415364
Target:  5'- uGGg--GCAGggGCGCCGUCGCugCg -3'
miRNA:   3'- uCCaagCGUUagUGCGGCAGCGugGg -5'
8093 3' -55.1 NC_001978.2 + 16255 0.7 0.415364
Target:  5'- cGGGUcCGaCGGUCACGCUuacCGCugCCg -3'
miRNA:   3'- -UCCAaGC-GUUAGUGCGGca-GCGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.