miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 5' -53.8 NC_001978.2 + 12928 1.07 0.001249
Target:  5'- aUCGAGCCCGACGACAUAAGCGCGAUAc -3'
miRNA:   3'- -AGCUCGGGCUGCUGUAUUCGCGCUAU- -5'
8093 5' -53.8 NC_001978.2 + 22813 0.85 0.053113
Target:  5'- gCGAGCCCGACGACGgcAGCGaCGAa- -3'
miRNA:   3'- aGCUCGGGCUGCUGUauUCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 13724 0.76 0.191911
Target:  5'- gUCG-GCgCCGACcGCAUAGGCGCGAg- -3'
miRNA:   3'- -AGCuCG-GGCUGcUGUAUUCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 39038 0.74 0.265778
Target:  5'- uUCGAGCCCGACguaauccgGugGUGguGGCGUGAg- -3'
miRNA:   3'- -AGCUCGGGCUG--------CugUAU--UCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 2925 0.74 0.272875
Target:  5'- -aGcGCUCGACGGCAUugAGGCGCGAg- -3'
miRNA:   3'- agCuCGGGCUGCUGUA--UUCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 7989 0.73 0.318663
Target:  5'- cCGGGCUCGACGuACGUGAGCuuGAUu -3'
miRNA:   3'- aGCUCGGGCUGC-UGUAUUCGcgCUAu -5'
8093 5' -53.8 NC_001978.2 + 30435 0.73 0.326833
Target:  5'- gCGAGCCgGGCGGCuucGGCGCGu-- -3'
miRNA:   3'- aGCUCGGgCUGCUGuauUCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 28352 0.72 0.361051
Target:  5'- gCGAGCCCGGCGcguuGCAUGuacGCGCa--- -3'
miRNA:   3'- aGCUCGGGCUGC----UGUAUu--CGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 12894 0.71 0.397686
Target:  5'- aCGGGUgCGACGGCGUGAuUGCGAa- -3'
miRNA:   3'- aGCUCGgGCUGCUGUAUUcGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 35569 0.71 0.426682
Target:  5'- gUCGAGCCggaGACGGCGccccUGAGCGuCGGc- -3'
miRNA:   3'- -AGCUCGGg--CUGCUGU----AUUCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 28221 0.7 0.456896
Target:  5'- gUCGAGCCCGGCGuaaagguuguACGUAgGGUGcCGAa- -3'
miRNA:   3'- -AGCUCGGGCUGC----------UGUAU-UCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 25943 0.7 0.477664
Target:  5'- cCGGGUacgaccuuaCUGACuGGCGUGAGCGCGAc- -3'
miRNA:   3'- aGCUCG---------GGCUG-CUGUAUUCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 8599 0.7 0.477664
Target:  5'- aUCGAGCCCGcCGACGUcgggAAGC-UGAa- -3'
miRNA:   3'- -AGCUCGGGCuGCUGUA----UUCGcGCUau -5'
8093 5' -53.8 NC_001978.2 + 1680 0.7 0.481874
Target:  5'- gCGAGCCCGaAgcuugccgccgugugCGACGUucAGCGCGAc- -3'
miRNA:   3'- aGCUCGGGC-U---------------GCUGUAu-UCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 39423 0.7 0.488221
Target:  5'- aUCaAGCUCGAcCGGCcgGAGCGUGAUc -3'
miRNA:   3'- -AGcUCGGGCU-GCUGuaUUCGCGCUAu -5'
8093 5' -53.8 NC_001978.2 + 89 0.69 0.498887
Target:  5'- cUGGGUCCGGCGGCucaccuAGCGCGc-- -3'
miRNA:   3'- aGCUCGGGCUGCUGuau---UCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 28170 0.69 0.509655
Target:  5'- cCGGGCUCGACGugAUcuauacGGCGCGc-- -3'
miRNA:   3'- aGCUCGGGCUGCugUAu-----UCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 23634 0.69 0.509655
Target:  5'- aCGaAGCCgaaGACGACGUuGAGCGCGu-- -3'
miRNA:   3'- aGC-UCGGg--CUGCUGUA-UUCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 33808 0.68 0.553621
Target:  5'- gUCGAGCgacCCGACGACGgcAGauCGAUGa -3'
miRNA:   3'- -AGCUCG---GGCUGCUGUauUCgcGCUAU- -5'
8093 5' -53.8 NC_001978.2 + 24382 0.68 0.558085
Target:  5'- aUCGGGCCCGACGcugcgccugcccuggGCGac-GUGCGAg- -3'
miRNA:   3'- -AGCUCGGGCUGC---------------UGUauuCGCGCUau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.