Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8093 | 5' | -53.8 | NC_001978.2 | + | 12928 | 1.07 | 0.001249 |
Target: 5'- aUCGAGCCCGACGACAUAAGCGCGAUAc -3' miRNA: 3'- -AGCUCGGGCUGCUGUAUUCGCGCUAU- -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 22813 | 0.85 | 0.053113 |
Target: 5'- gCGAGCCCGACGACGgcAGCGaCGAa- -3' miRNA: 3'- aGCUCGGGCUGCUGUauUCGC-GCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 13724 | 0.76 | 0.191911 |
Target: 5'- gUCG-GCgCCGACcGCAUAGGCGCGAg- -3' miRNA: 3'- -AGCuCG-GGCUGcUGUAUUCGCGCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 39038 | 0.74 | 0.265778 |
Target: 5'- uUCGAGCCCGACguaauccgGugGUGguGGCGUGAg- -3' miRNA: 3'- -AGCUCGGGCUG--------CugUAU--UCGCGCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 2925 | 0.74 | 0.272875 |
Target: 5'- -aGcGCUCGACGGCAUugAGGCGCGAg- -3' miRNA: 3'- agCuCGGGCUGCUGUA--UUCGCGCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 7989 | 0.73 | 0.318663 |
Target: 5'- cCGGGCUCGACGuACGUGAGCuuGAUu -3' miRNA: 3'- aGCUCGGGCUGC-UGUAUUCGcgCUAu -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 30435 | 0.73 | 0.326833 |
Target: 5'- gCGAGCCgGGCGGCuucGGCGCGu-- -3' miRNA: 3'- aGCUCGGgCUGCUGuauUCGCGCuau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 28352 | 0.72 | 0.361051 |
Target: 5'- gCGAGCCCGGCGcguuGCAUGuacGCGCa--- -3' miRNA: 3'- aGCUCGGGCUGC----UGUAUu--CGCGcuau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 12894 | 0.71 | 0.397686 |
Target: 5'- aCGGGUgCGACGGCGUGAuUGCGAa- -3' miRNA: 3'- aGCUCGgGCUGCUGUAUUcGCGCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 35569 | 0.71 | 0.426682 |
Target: 5'- gUCGAGCCggaGACGGCGccccUGAGCGuCGGc- -3' miRNA: 3'- -AGCUCGGg--CUGCUGU----AUUCGC-GCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 28221 | 0.7 | 0.456896 |
Target: 5'- gUCGAGCCCGGCGuaaagguuguACGUAgGGUGcCGAa- -3' miRNA: 3'- -AGCUCGGGCUGC----------UGUAU-UCGC-GCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 25943 | 0.7 | 0.477664 |
Target: 5'- cCGGGUacgaccuuaCUGACuGGCGUGAGCGCGAc- -3' miRNA: 3'- aGCUCG---------GGCUG-CUGUAUUCGCGCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 8599 | 0.7 | 0.477664 |
Target: 5'- aUCGAGCCCGcCGACGUcgggAAGC-UGAa- -3' miRNA: 3'- -AGCUCGGGCuGCUGUA----UUCGcGCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 1680 | 0.7 | 0.481874 |
Target: 5'- gCGAGCCCGaAgcuugccgccgugugCGACGUucAGCGCGAc- -3' miRNA: 3'- aGCUCGGGC-U---------------GCUGUAu-UCGCGCUau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 39423 | 0.7 | 0.488221 |
Target: 5'- aUCaAGCUCGAcCGGCcgGAGCGUGAUc -3' miRNA: 3'- -AGcUCGGGCU-GCUGuaUUCGCGCUAu -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 89 | 0.69 | 0.498887 |
Target: 5'- cUGGGUCCGGCGGCucaccuAGCGCGc-- -3' miRNA: 3'- aGCUCGGGCUGCUGuau---UCGCGCuau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 28170 | 0.69 | 0.509655 |
Target: 5'- cCGGGCUCGACGugAUcuauacGGCGCGc-- -3' miRNA: 3'- aGCUCGGGCUGCugUAu-----UCGCGCuau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 23634 | 0.69 | 0.509655 |
Target: 5'- aCGaAGCCgaaGACGACGUuGAGCGCGu-- -3' miRNA: 3'- aGC-UCGGg--CUGCUGUA-UUCGCGCuau -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 33808 | 0.68 | 0.553621 |
Target: 5'- gUCGAGCgacCCGACGACGgcAGauCGAUGa -3' miRNA: 3'- -AGCUCG---GGCUGCUGUauUCgcGCUAU- -5' |
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8093 | 5' | -53.8 | NC_001978.2 | + | 24382 | 0.68 | 0.558085 |
Target: 5'- aUCGGGCCCGACGcugcgccugcccuggGCGac-GUGCGAg- -3' miRNA: 3'- -AGCUCGGGCUGC---------------UGUauuCGCGCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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