miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 5' -53.8 NC_001978.2 + 39038 0.74 0.265778
Target:  5'- uUCGAGCCCGACguaauccgGugGUGguGGCGUGAg- -3'
miRNA:   3'- -AGCUCGGGCUG--------CugUAU--UCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 15856 0.68 0.58732
Target:  5'- gUCGAcUCCGGCGACGUGuaccaaCGCGGUGc -3'
miRNA:   3'- -AGCUcGGGCUGCUGUAUuc----GCGCUAU- -5'
8093 5' -53.8 NC_001978.2 + 36797 0.68 0.598646
Target:  5'- -gGAGCCugccgaCGACGACGUuccGGCGCGu-- -3'
miRNA:   3'- agCUCGG------GCUGCUGUAu--UCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 29008 0.68 0.610002
Target:  5'- aCGAuuGCCCGACaGACcgGAGCGacCGAa- -3'
miRNA:   3'- aGCU--CGGGCUG-CUGuaUUCGC--GCUau -5'
8093 5' -53.8 NC_001978.2 + 33015 0.67 0.666877
Target:  5'- uUCGAGCCCGgggcuACGGCcggAAGCaagcccGCGAa- -3'
miRNA:   3'- -AGCUCGGGC-----UGCUGua-UUCG------CGCUau -5'
8093 5' -53.8 NC_001978.2 + 36621 0.67 0.666877
Target:  5'- gUCGGGCCCG-UGuACAUGaaGGCGCu--- -3'
miRNA:   3'- -AGCUCGGGCuGC-UGUAU--UCGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 6738 0.66 0.678194
Target:  5'- cCGGGCaauCCGGuCGACGcUGAGCGCGc-- -3'
miRNA:   3'- aGCUCG---GGCU-GCUGU-AUUCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 7391 0.66 0.689463
Target:  5'- -gGAGCCUGACGGCcgAAGUugaggaagcuGUGAa- -3'
miRNA:   3'- agCUCGGGCUGCUGuaUUCG----------CGCUau -5'
8093 5' -53.8 NC_001978.2 + 25427 0.66 0.722868
Target:  5'- uUCGGGCUCGACGucgccCAggcugAGGCGCu--- -3'
miRNA:   3'- -AGCUCGGGCUGCu----GUa----UUCGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 39395 0.68 0.576035
Target:  5'- aUCGAGCCCGcugaGugGUAugagcuucaGGCGUGGUu -3'
miRNA:   3'- -AGCUCGGGCug--CugUAU---------UCGCGCUAu -5'
8093 5' -53.8 NC_001978.2 + 30488 0.68 0.576035
Target:  5'- -aGAGCCCGACGGCGagaUucGCcCGAa- -3'
miRNA:   3'- agCUCGGGCUGCUGU---AuuCGcGCUau -5'
8093 5' -53.8 NC_001978.2 + 24382 0.68 0.558085
Target:  5'- aUCGGGCCCGACGcugcgccugcccuggGCGac-GUGCGAg- -3'
miRNA:   3'- -AGCUCGGGCUGC---------------UGUauuCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 2925 0.74 0.272875
Target:  5'- -aGcGCUCGACGGCAUugAGGCGCGAg- -3'
miRNA:   3'- agCuCGGGCUGCUGUA--UUCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 12894 0.71 0.397686
Target:  5'- aCGGGUgCGACGGCGUGAuUGCGAa- -3'
miRNA:   3'- aGCUCGgGCUGCUGUAUUcGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 35569 0.71 0.426682
Target:  5'- gUCGAGCCggaGACGGCGccccUGAGCGuCGGc- -3'
miRNA:   3'- -AGCUCGGg--CUGCUGU----AUUCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 8599 0.7 0.477664
Target:  5'- aUCGAGCCCGcCGACGUcgggAAGC-UGAa- -3'
miRNA:   3'- -AGCUCGGGCuGCUGUA----UUCGcGCUau -5'
8093 5' -53.8 NC_001978.2 + 25943 0.7 0.477664
Target:  5'- cCGGGUacgaccuuaCUGACuGGCGUGAGCGCGAc- -3'
miRNA:   3'- aGCUCG---------GGCUG-CUGUAUUCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 1680 0.7 0.481874
Target:  5'- gCGAGCCCGaAgcuugccgccgugugCGACGUucAGCGCGAc- -3'
miRNA:   3'- aGCUCGGGC-U---------------GCUGUAu-UCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 23634 0.69 0.509655
Target:  5'- aCGaAGCCgaaGACGACGUuGAGCGCGu-- -3'
miRNA:   3'- aGC-UCGGg--CUGCUGUA-UUCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 28170 0.69 0.509655
Target:  5'- cCGGGCUCGACGugAUcuauacGGCGCGc-- -3'
miRNA:   3'- aGCUCGGGCUGCugUAu-----UCGCGCuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.