miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 5' -53.8 NC_001978.2 + 28170 0.69 0.509655
Target:  5'- cCGGGCUCGACGugAUcuauacGGCGCGc-- -3'
miRNA:   3'- aGCUCGGGCUGCugUAu-----UCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 28221 0.7 0.456896
Target:  5'- gUCGAGCCCGGCGuaaagguuguACGUAgGGUGcCGAa- -3'
miRNA:   3'- -AGCUCGGGCUGC----------UGUAU-UCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 28352 0.72 0.361051
Target:  5'- gCGAGCCCGGCGcguuGCAUGuacGCGCa--- -3'
miRNA:   3'- aGCUCGGGCUGC----UGUAUu--CGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 29008 0.68 0.610002
Target:  5'- aCGAuuGCCCGACaGACcgGAGCGacCGAa- -3'
miRNA:   3'- aGCU--CGGGCUG-CUGuaUUCGC--GCUau -5'
8093 5' -53.8 NC_001978.2 + 30435 0.73 0.326833
Target:  5'- gCGAGCCgGGCGGCuucGGCGCGu-- -3'
miRNA:   3'- aGCUCGGgCUGCUGuauUCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 30488 0.68 0.576035
Target:  5'- -aGAGCCCGACGGCGagaUucGCcCGAa- -3'
miRNA:   3'- agCUCGGGCUGCUGU---AuuCGcGCUau -5'
8093 5' -53.8 NC_001978.2 + 32319 0.66 0.722868
Target:  5'- gUCGuGaCCCGGuCGACGUuGAGCGCu--- -3'
miRNA:   3'- -AGCuC-GGGCU-GCUGUA-UUCGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 33015 0.67 0.666877
Target:  5'- uUCGAGCCCGgggcuACGGCcggAAGCaagcccGCGAa- -3'
miRNA:   3'- -AGCUCGGGC-----UGCUGua-UUCG------CGCUau -5'
8093 5' -53.8 NC_001978.2 + 33808 0.68 0.553621
Target:  5'- gUCGAGCgacCCGACGACGgcAGauCGAUGa -3'
miRNA:   3'- -AGCUCG---GGCUGCUGUauUCgcGCUAU- -5'
8093 5' -53.8 NC_001978.2 + 35569 0.71 0.426682
Target:  5'- gUCGAGCCggaGACGGCGccccUGAGCGuCGGc- -3'
miRNA:   3'- -AGCUCGGg--CUGCUGU----AUUCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 35814 0.67 0.625933
Target:  5'- gUCGAGCUgGGCGACGgcguUGccaagggcuucgcauGGCGCGGc- -3'
miRNA:   3'- -AGCUCGGgCUGCUGU----AU---------------UCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 36621 0.67 0.666877
Target:  5'- gUCGGGCCCG-UGuACAUGaaGGCGCu--- -3'
miRNA:   3'- -AGCUCGGGCuGC-UGUAU--UCGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 36797 0.68 0.598646
Target:  5'- -gGAGCCugccgaCGACGACGUuccGGCGCGu-- -3'
miRNA:   3'- agCUCGG------GCUGCUGUAu--UCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 39038 0.74 0.265778
Target:  5'- uUCGAGCCCGACguaauccgGugGUGguGGCGUGAg- -3'
miRNA:   3'- -AGCUCGGGCUG--------CugUAU--UCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 39395 0.68 0.576035
Target:  5'- aUCGAGCCCGcugaGugGUAugagcuucaGGCGUGGUu -3'
miRNA:   3'- -AGCUCGGGCug--CugUAU---------UCGCGCUAu -5'
8093 5' -53.8 NC_001978.2 + 39423 0.7 0.488221
Target:  5'- aUCaAGCUCGAcCGGCcgGAGCGUGAUc -3'
miRNA:   3'- -AGcUCGGGCU-GCUGuaUUCGCGCUAu -5'
8093 5' -53.8 NC_001978.2 + 40116 0.68 0.610002
Target:  5'- -aGAGCCCGACGAacac-GCGCu--- -3'
miRNA:   3'- agCUCGGGCUGCUguauuCGCGcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.