Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8094 | 3' | -56.4 | NC_001978.2 | + | 35985 | 0.67 | 0.605733 |
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Target: 5'- gGCGAcacccCGGAGacUGcCGCCGAcCCGGg -3' miRNA: 3'- gCGCUu----GCCUCa-GCuGCGGCUuGGCC- -5' |
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| 8094 | 3' | -56.4 | NC_001978.2 | + | 36763 | 0.71 | 0.349903 |
|
Target: 5'- aCGUccuucCGGAGcCGACGCCGGagccugaGCCGGa -3' miRNA: 3'- -GCGcuu--GCCUCaGCUGCGGCU-------UGGCC- -5' |
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| 8094 | 3' | -56.4 | NC_001978.2 | + | 38027 | 0.66 | 0.627437 |
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Target: 5'- gCGCGcugccccaGGAcGaCGACGgCGAGCCGGu -3' miRNA: 3'- -GCGCuug-----CCU-CaGCUGCgGCUUGGCC- -5' |
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| 8094 | 3' | -56.4 | NC_001978.2 | + | 39153 | 0.67 | 0.552004 |
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Target: 5'- aGCGcAUGGAcGcUGACGCCGuGCCGa -3' miRNA: 3'- gCGCuUGCCU-CaGCUGCGGCuUGGCc -5' |
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| 8094 | 3' | -56.4 | NC_001978.2 | + | 39403 | 0.66 | 0.627437 |
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Target: 5'- gCGUGAuCGG-GUCG-CGCUGAAUgCGGu -3' miRNA: 3'- -GCGCUuGCCuCAGCuGCGGCUUG-GCC- -5' |
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| 8094 | 3' | -56.4 | NC_001978.2 | + | 39638 | 0.68 | 0.541414 |
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Target: 5'- uGCGGACGG-GUCGACcaCCuu-CCGGc -3' miRNA: 3'- gCGCUUGCCuCAGCUGc-GGcuuGGCC- -5' |
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| 8094 | 3' | -56.4 | NC_001978.2 | + | 41350 | 0.71 | 0.342519 |
|
Target: 5'- uGCaAGCGGcuugauguGGUCGACGUCGAGCUGu -3' miRNA: 3'- gCGcUUGCC--------UCAGCUGCGGCUUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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