miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 11441 0.67 0.594909
Target:  5'- uCGUGAuggcACGGgcacgcaagcGGUCGGCGCCGcucGACCu- -3'
miRNA:   3'- -GCGCU----UGCC----------UCAGCUGCGGC---UUGGcc -5'
8094 3' -56.4 NC_001978.2 + 13660 0.69 0.469547
Target:  5'- uCGCGccuAUGcGGUCGGCGCCGAcaaCGGc -3'
miRNA:   3'- -GCGCu--UGCcUCAGCUGCGGCUug-GCC- -5'
8094 3' -56.4 NC_001978.2 + 33554 0.69 0.469547
Target:  5'- uGCGggUGucgcccuuGUCGGCGCCGuGACCGu -3'
miRNA:   3'- gCGCuuGCcu------CAGCUGCGGC-UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 27174 0.69 0.479531
Target:  5'- gGCGAccCGGAGUCGAuuagcaccgcaaCGCgUGAguACCGGg -3'
miRNA:   3'- gCGCUu-GCCUCAGCU------------GCG-GCU--UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 16492 0.68 0.496738
Target:  5'- aCGUGAcgggcuucaacaucACGGAGcCGACGaCCGuaAACCGa -3'
miRNA:   3'- -GCGCU--------------UGCCUCaGCUGC-GGC--UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 33781 0.68 0.499803
Target:  5'- cCGCGAAgcgugcUGGGcGcUCGACGUCGAACCu- -3'
miRNA:   3'- -GCGCUU------GCCU-C-AGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 19855 0.68 0.510081
Target:  5'- gGCGAcguGCGca-UUGGCGCCGuGCCGGg -3'
miRNA:   3'- gCGCU---UGCcucAGCUGCGGCuUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 39153 0.67 0.552004
Target:  5'- aGCGcAUGGAcGcUGACGCCGuGCCGa -3'
miRNA:   3'- gCGCuUGCCU-CaGCUGCGGCuUGGCc -5'
8094 3' -56.4 NC_001978.2 + 26459 0.67 0.594909
Target:  5'- uCGCGAACGGcguGGUCGACcuUCGua-CGGg -3'
miRNA:   3'- -GCGCUUGCC---UCAGCUGc-GGCuugGCC- -5'
8094 3' -56.4 NC_001978.2 + 32283 0.69 0.469547
Target:  5'- aGCGGACGGAcGUUcacGCGCCGuGCCu- -3'
miRNA:   3'- gCGCUUGCCU-CAGc--UGCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 29028 0.7 0.421315
Target:  5'- aGCGAccgaaGCGGAGauugcccgugCGGuCGCCGAguaugACCGGg -3'
miRNA:   3'- gCGCU-----UGCCUCa---------GCU-GCGGCU-----UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 16319 0.7 0.415729
Target:  5'- uGCGGACGGAGUUGcccCGCuCGAcuccgcgaagcgccuGCCGa -3'
miRNA:   3'- gCGCUUGCCUCAGCu--GCG-GCU---------------UGGCc -5'
8094 3' -56.4 NC_001978.2 + 22270 0.79 0.117467
Target:  5'- aCGCcGACGGcaaccCGACGCCGGACCGGu -3'
miRNA:   3'- -GCGcUUGCCuca--GCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 7174 0.75 0.201928
Target:  5'- gGCGAACuuGAGauugacguacUCGACGCCGgAGCCGGu -3'
miRNA:   3'- gCGCUUGc-CUC----------AGCUGCGGC-UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 23515 0.75 0.212804
Target:  5'- gGCGAA-GGAGUaCGacGCGCCGAACCcGGc -3'
miRNA:   3'- gCGCUUgCCUCA-GC--UGCGGCUUGG-CC- -5'
8094 3' -56.4 NC_001978.2 + 17525 0.74 0.242209
Target:  5'- uGCGGGCGGcuccGUCucCGCCGAcCCGGa -3'
miRNA:   3'- gCGCUUGCCu---CAGcuGCGGCUuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 28991 0.73 0.254888
Target:  5'- aCGgGGGCGGAGUCGccACGauugcCCGAcagACCGGa -3'
miRNA:   3'- -GCgCUUGCCUCAGC--UGC-----GGCU---UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 24817 0.73 0.268107
Target:  5'- uCGCGAACaGAGaucaugCGGCGCUGGggcuACCGGu -3'
miRNA:   3'- -GCGCUUGcCUCa-----GCUGCGGCU----UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 4103 0.72 0.318725
Target:  5'- -cUGGGCGaAGUCGGCGaaGAGCCGGa -3'
miRNA:   3'- gcGCUUGCcUCAGCUGCggCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 36763 0.71 0.349903
Target:  5'- aCGUccuucCGGAGcCGACGCCGGagccugaGCCGGa -3'
miRNA:   3'- -GCGcuu--GCCUCaGCUGCGGCU-------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.