miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 5999 0.67 0.605733
Target:  5'- gCGCGccGACGGucuucuuGUCGACGCCcgGGGCgCGa -3'
miRNA:   3'- -GCGC--UUGCCu------CAGCUGCGG--CUUG-GCc -5'
8094 3' -56.4 NC_001978.2 + 29142 0.67 0.605733
Target:  5'- uGUGuccgucACGG-GUCGGCGCCugccgcucGACCGGa -3'
miRNA:   3'- gCGCu-----UGCCuCAGCUGCGGc-------UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 11441 0.67 0.594909
Target:  5'- uCGUGAuggcACGGgcacgcaagcGGUCGGCGCCGcucGACCu- -3'
miRNA:   3'- -GCGCU----UGCC----------UCAGCUGCGGC---UUGGcc -5'
8094 3' -56.4 NC_001978.2 + 19596 0.67 0.594909
Target:  5'- gGCGuGAUGuGGUCGGCGCCGGucagcuCCGu -3'
miRNA:   3'- gCGC-UUGCcUCAGCUGCGGCUu-----GGCc -5'
8094 3' -56.4 NC_001978.2 + 26459 0.67 0.594909
Target:  5'- uCGCGAACGGcguGGUCGACcuUCGua-CGGg -3'
miRNA:   3'- -GCGCUUGCC---UCAGCUGc-GGCuugGCC- -5'
8094 3' -56.4 NC_001978.2 + 1007 0.67 0.584117
Target:  5'- gCGCGAcgaagccgcCGGAGUCGACaaGCCGGuugagggccuUCGGg -3'
miRNA:   3'- -GCGCUu--------GCCUCAGCUG--CGGCUu---------GGCC- -5'
8094 3' -56.4 NC_001978.2 + 9144 0.67 0.573363
Target:  5'- aGC---CGGAGUCG-CGCCcAACUGGg -3'
miRNA:   3'- gCGcuuGCCUCAGCuGCGGcUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 39153 0.67 0.552004
Target:  5'- aGCGcAUGGAcGcUGACGCCGuGCCGa -3'
miRNA:   3'- gCGCuUGCCU-CaGCUGCGGCuUGGCc -5'
8094 3' -56.4 NC_001978.2 + 39638 0.68 0.541414
Target:  5'- uGCGGACGG-GUCGACcaCCuu-CCGGc -3'
miRNA:   3'- gCGCUUGCCuCAGCUGc-GGcuuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 25312 0.68 0.541414
Target:  5'- gGCcGACGGAGcugaCGACGUCGcccgugucacAACCGGc -3'
miRNA:   3'- gCGcUUGCCUCa---GCUGCGGC----------UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 19855 0.68 0.510081
Target:  5'- gGCGAcguGCGca-UUGGCGCCGuGCCGGg -3'
miRNA:   3'- gCGCU---UGCcucAGCUGCGGCuUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 5615 0.68 0.510081
Target:  5'- gGCGAcccAUGGcGUcacCGAUgGCCGGACCGGc -3'
miRNA:   3'- gCGCU---UGCCuCA---GCUG-CGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 3071 0.68 0.510081
Target:  5'- gCGCGucauGCGGAGUgacCGucuCGCCGGaaGCCGc -3'
miRNA:   3'- -GCGCu---UGCCUCA---GCu--GCGGCU--UGGCc -5'
8094 3' -56.4 NC_001978.2 + 33781 0.68 0.499803
Target:  5'- cCGCGAAgcgugcUGGGcGcUCGACGUCGAACCu- -3'
miRNA:   3'- -GCGCUU------GCCU-C-AGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 18532 0.68 0.499803
Target:  5'- cCGUGAAgGGAGUCGGCaacCUGAGCgGc -3'
miRNA:   3'- -GCGCUUgCCUCAGCUGc--GGCUUGgCc -5'
8094 3' -56.4 NC_001978.2 + 16492 0.68 0.496738
Target:  5'- aCGUGAcgggcuucaacaucACGGAGcCGACGaCCGuaAACCGa -3'
miRNA:   3'- -GCGCU--------------UGCCUCaGCUGC-GGC--UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 20759 0.69 0.479531
Target:  5'- gCGCGAACgagGGAGUUGuGCGCCcccuGCCGc -3'
miRNA:   3'- -GCGCUUG---CCUCAGC-UGCGGcu--UGGCc -5'
8094 3' -56.4 NC_001978.2 + 27174 0.69 0.479531
Target:  5'- gGCGAccCGGAGUCGAuuagcaccgcaaCGCgUGAguACCGGg -3'
miRNA:   3'- gCGCUu-GCCUCAGCU------------GCG-GCU--UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 13660 0.69 0.469547
Target:  5'- uCGCGccuAUGcGGUCGGCGCCGAcaaCGGc -3'
miRNA:   3'- -GCGCu--UGCcUCAGCUGCGGCUug-GCC- -5'
8094 3' -56.4 NC_001978.2 + 33554 0.69 0.469547
Target:  5'- uGCGggUGucgcccuuGUCGGCGCCGuGACCGu -3'
miRNA:   3'- gCGCuuGCcu------CAGCUGCGGC-UUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.