Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8094 | 5' | -58.3 | NC_001978.2 | + | 4082 | 0.66 | 0.463781 |
Target: 5'- --aAGUACCgGGUgccGCUGAaCCUGGGc -3' miRNA: 3'- aagUCGUGGgCCAa--UGGCU-GGACCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 23812 | 0.66 | 0.453721 |
Target: 5'- -gCAGCgcucgACCCGGcgucGCCGgaaGCCUGGGc -3' miRNA: 3'- aaGUCG-----UGGGCCaa--UGGC---UGGACCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 34746 | 0.66 | 0.453721 |
Target: 5'- cUUCGGguCCCGGUcgcacuccgaACCGugCcGGGUg -3' miRNA: 3'- -AAGUCguGGGCCAa---------UGGCugGaCCCA- -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 40372 | 0.66 | 0.433964 |
Target: 5'- -aCAGCACagCGGggcgaGCCguuGACCUGGGg -3' miRNA: 3'- aaGUCGUGg-GCCaa---UGG---CUGGACCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 27542 | 0.66 | 0.414715 |
Target: 5'- cUUCGGCAuuccCCCgGGUUGCCGACUcccuuacGGGc -3' miRNA: 3'- -AAGUCGU----GGG-CCAAUGGCUGGa------CCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 1996 | 0.67 | 0.395999 |
Target: 5'- -aCGGU-CCUGGggGCCGAagCUGGGUg -3' miRNA: 3'- aaGUCGuGGGCCaaUGGCUg-GACCCA- -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 36270 | 0.67 | 0.360244 |
Target: 5'- aUUguGCgaACCCGGcgggUGCUGACCgGGGg -3' miRNA: 3'- -AAguCG--UGGGCCa---AUGGCUGGaCCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 19403 | 0.67 | 0.360244 |
Target: 5'- -gUAGCgcuccgauGCCCGGUUGCCGccgcacGCCgGGGa -3' miRNA: 3'- aaGUCG--------UGGGCCAAUGGC------UGGaCCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 858 | 0.68 | 0.351664 |
Target: 5'- -cCGGCGCCUGGgcGCgCGACUgggcacgGGGUc -3' miRNA: 3'- aaGUCGUGGGCCaaUG-GCUGGa------CCCA- -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 16725 | 0.68 | 0.351664 |
Target: 5'- --aAGCGCgCCGGUuuccUGCCcaGCCUGGGg -3' miRNA: 3'- aagUCGUG-GGCCA----AUGGc-UGGACCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 29928 | 0.68 | 0.34323 |
Target: 5'- gUCGGCAaCCCGGgcagggAgUGACCgGGGUc -3' miRNA: 3'- aAGUCGU-GGGCCaa----UgGCUGGaCCCA- -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 22037 | 0.69 | 0.273949 |
Target: 5'- -cCGGUACacgaaGGUUcgcGCCGACCUGGGc -3' miRNA: 3'- aaGUCGUGgg---CCAA---UGGCUGGACCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 28413 | 0.71 | 0.210615 |
Target: 5'- -cCGGCGCCCaGGUUGCCGaagcguugcuuGCCaUGGGc -3' miRNA: 3'- aaGUCGUGGG-CCAAUGGC-----------UGG-ACCCa -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 24155 | 0.73 | 0.151639 |
Target: 5'- gUUCAGCcgaccggcguugACuCCGGUUA-CGGCCUGGGUg -3' miRNA: 3'- -AAGUCG------------UG-GGCCAAUgGCUGGACCCA- -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 17778 | 0.74 | 0.13181 |
Target: 5'- --aAGCGCCU---UACCGACCUGGGUg -3' miRNA: 3'- aagUCGUGGGccaAUGGCUGGACCCA- -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 22470 | 0.75 | 0.108053 |
Target: 5'- aUCGGUuCCCGGUUGCCGuCC-GGGUc -3' miRNA: 3'- aAGUCGuGGGCCAAUGGCuGGaCCCA- -5' |
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8094 | 5' | -58.3 | NC_001978.2 | + | 13604 | 1.05 | 0.000589 |
Target: 5'- cUUCAGCACCCGGUUACCGACCUGGGUa -3' miRNA: 3'- -AAGUCGUGGGCCAAUGGCUGGACCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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