miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 5' -58.3 NC_001978.2 + 4082 0.66 0.463781
Target:  5'- --aAGUACCgGGUgccGCUGAaCCUGGGc -3'
miRNA:   3'- aagUCGUGGgCCAa--UGGCU-GGACCCa -5'
8094 5' -58.3 NC_001978.2 + 34746 0.66 0.453721
Target:  5'- cUUCGGguCCCGGUcgcacuccgaACCGugCcGGGUg -3'
miRNA:   3'- -AAGUCguGGGCCAa---------UGGCugGaCCCA- -5'
8094 5' -58.3 NC_001978.2 + 23812 0.66 0.453721
Target:  5'- -gCAGCgcucgACCCGGcgucGCCGgaaGCCUGGGc -3'
miRNA:   3'- aaGUCG-----UGGGCCaa--UGGC---UGGACCCa -5'
8094 5' -58.3 NC_001978.2 + 40372 0.66 0.433964
Target:  5'- -aCAGCACagCGGggcgaGCCguuGACCUGGGg -3'
miRNA:   3'- aaGUCGUGg-GCCaa---UGG---CUGGACCCa -5'
8094 5' -58.3 NC_001978.2 + 27542 0.66 0.414715
Target:  5'- cUUCGGCAuuccCCCgGGUUGCCGACUcccuuacGGGc -3'
miRNA:   3'- -AAGUCGU----GGG-CCAAUGGCUGGa------CCCa -5'
8094 5' -58.3 NC_001978.2 + 1996 0.67 0.395999
Target:  5'- -aCGGU-CCUGGggGCCGAagCUGGGUg -3'
miRNA:   3'- aaGUCGuGGGCCaaUGGCUg-GACCCA- -5'
8094 5' -58.3 NC_001978.2 + 36270 0.67 0.360244
Target:  5'- aUUguGCgaACCCGGcgggUGCUGACCgGGGg -3'
miRNA:   3'- -AAguCG--UGGGCCa---AUGGCUGGaCCCa -5'
8094 5' -58.3 NC_001978.2 + 19403 0.67 0.360244
Target:  5'- -gUAGCgcuccgauGCCCGGUUGCCGccgcacGCCgGGGa -3'
miRNA:   3'- aaGUCG--------UGGGCCAAUGGC------UGGaCCCa -5'
8094 5' -58.3 NC_001978.2 + 858 0.68 0.351664
Target:  5'- -cCGGCGCCUGGgcGCgCGACUgggcacgGGGUc -3'
miRNA:   3'- aaGUCGUGGGCCaaUG-GCUGGa------CCCA- -5'
8094 5' -58.3 NC_001978.2 + 16725 0.68 0.351664
Target:  5'- --aAGCGCgCCGGUuuccUGCCcaGCCUGGGg -3'
miRNA:   3'- aagUCGUG-GGCCA----AUGGc-UGGACCCa -5'
8094 5' -58.3 NC_001978.2 + 29928 0.68 0.34323
Target:  5'- gUCGGCAaCCCGGgcagggAgUGACCgGGGUc -3'
miRNA:   3'- aAGUCGU-GGGCCaa----UgGCUGGaCCCA- -5'
8094 5' -58.3 NC_001978.2 + 22037 0.69 0.273949
Target:  5'- -cCGGUACacgaaGGUUcgcGCCGACCUGGGc -3'
miRNA:   3'- aaGUCGUGgg---CCAA---UGGCUGGACCCa -5'
8094 5' -58.3 NC_001978.2 + 28413 0.71 0.210615
Target:  5'- -cCGGCGCCCaGGUUGCCGaagcguugcuuGCCaUGGGc -3'
miRNA:   3'- aaGUCGUGGG-CCAAUGGC-----------UGG-ACCCa -5'
8094 5' -58.3 NC_001978.2 + 24155 0.73 0.151639
Target:  5'- gUUCAGCcgaccggcguugACuCCGGUUA-CGGCCUGGGUg -3'
miRNA:   3'- -AAGUCG------------UG-GGCCAAUgGCUGGACCCA- -5'
8094 5' -58.3 NC_001978.2 + 17778 0.74 0.13181
Target:  5'- --aAGCGCCU---UACCGACCUGGGUg -3'
miRNA:   3'- aagUCGUGGGccaAUGGCUGGACCCA- -5'
8094 5' -58.3 NC_001978.2 + 22470 0.75 0.108053
Target:  5'- aUCGGUuCCCGGUUGCCGuCC-GGGUc -3'
miRNA:   3'- aAGUCGuGGGCCAAUGGCuGGaCCCA- -5'
8094 5' -58.3 NC_001978.2 + 13604 1.05 0.000589
Target:  5'- cUUCAGCACCCGGUUACCGACCUGGGUa -3'
miRNA:   3'- -AAGUCGUGGGCCAAUGGCUGGACCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.