miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8095 3' -56.3 NC_001978.2 + 14152 0.95 0.005215
Target:  5'- gACCGCAGCAAGCCGCCGCUUcaaGUCg -3'
miRNA:   3'- -UGGCGUCGUUCGGCGGCGAAuugCAG- -5'
8095 3' -56.3 NC_001978.2 + 12348 0.72 0.233963
Target:  5'- aAUCGCgAGCccguugAAGCCGuCCGCUgccGACGUCg -3'
miRNA:   3'- -UGGCG-UCG------UUCGGC-GGCGAa--UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 8402 0.72 0.233963
Target:  5'- cGCCGUucGUAAGuuGCCGCcacGACGUCc -3'
miRNA:   3'- -UGGCGu-CGUUCggCGGCGaa-UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 1665 0.71 0.267113
Target:  5'- gGCgGCAGCGAugauCUGUCGCUgAGCGUCg -3'
miRNA:   3'- -UGgCGUCGUUc---GGCGGCGAaUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 13869 0.71 0.274182
Target:  5'- -gUGCGGCuccGGCCGUCGCUaUGGCGUa -3'
miRNA:   3'- ugGCGUCGu--UCGGCGGCGA-AUUGCAg -5'
8095 3' -56.3 NC_001978.2 + 18765 0.7 0.303958
Target:  5'- gACCGCAuucacgagugucGCGAGCCggguuuguacGCCGUacGACGUCg -3'
miRNA:   3'- -UGGCGU------------CGUUCGG----------CGGCGaaUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 3874 0.7 0.303958
Target:  5'- uCUGUucAGCAAGcCCGCUGCcccaUGACGUCg -3'
miRNA:   3'- uGGCG--UCGUUC-GGCGGCGa---AUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 31866 0.69 0.361895
Target:  5'- uGCCGaC-GCGAGCCGCCcaGUcgggAACGUCg -3'
miRNA:   3'- -UGGC-GuCGUUCGGCGG--CGaa--UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 21924 0.69 0.370774
Target:  5'- cCCGUGGCAAGCCaagauggcaGCgaCGCUU-GCGUCg -3'
miRNA:   3'- uGGCGUCGUUCGG---------CG--GCGAAuUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 30722 0.69 0.370774
Target:  5'- uGCCGUccuuCAcGCCGCCGUgucGACGUCg -3'
miRNA:   3'- -UGGCGuc--GUuCGGCGGCGaa-UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 15705 0.69 0.388972
Target:  5'- aGCCcCAGCgAAGCCGCCGg--AACcGUCg -3'
miRNA:   3'- -UGGcGUCG-UUCGGCGGCgaaUUG-CAG- -5'
8095 3' -56.3 NC_001978.2 + 31412 0.68 0.398288
Target:  5'- -gUGCGGCAGGCaaGCCGCUUGAUc-- -3'
miRNA:   3'- ugGCGUCGUUCGg-CGGCGAAUUGcag -5'
8095 3' -56.3 NC_001978.2 + 10107 0.68 0.427078
Target:  5'- cGCCGguaaGGCAguGGUCGCCuGggUGACGUCa -3'
miRNA:   3'- -UGGCg---UCGU--UCGGCGG-CgaAUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 38137 0.68 0.436945
Target:  5'- cGCaCGgGGCGAGCCGCUG----ACGUCc -3'
miRNA:   3'- -UG-GCgUCGUUCGGCGGCgaauUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 39995 0.67 0.457065
Target:  5'- gGCgGCuucaaguucGGCAAGCCGCUcuuccgccccuuGCUgccggAGCGUCa -3'
miRNA:   3'- -UGgCG---------UCGUUCGGCGG------------CGAa----UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 15129 0.67 0.46731
Target:  5'- cGCCGCAGCuccGCCacuucaGCCGCaacccGGCGUUc -3'
miRNA:   3'- -UGGCGUCGuu-CGG------CGGCGaa---UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 12117 0.67 0.477672
Target:  5'- -gUGCcGgAAGCCGCCGCgcgccgUAGCGaUCa -3'
miRNA:   3'- ugGCGuCgUUCGGCGGCGa-----AUUGC-AG- -5'
8095 3' -56.3 NC_001978.2 + 31060 0.67 0.488146
Target:  5'- uGCCGCuguGCucgAAGCCGCUGCcgcugAGCGa- -3'
miRNA:   3'- -UGGCGu--CG---UUCGGCGGCGaa---UUGCag -5'
8095 3' -56.3 NC_001978.2 + 1685 0.66 0.509408
Target:  5'- cCCGaAGCuuGCCGCCGUgugcGACGUUc -3'
miRNA:   3'- uGGCgUCGuuCGGCGGCGaa--UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 11999 0.66 0.519103
Target:  5'- -aCGuCAGCGaagccgaAGCCGCCGUguauuCGUCu -3'
miRNA:   3'- ugGC-GUCGU-------UCGGCGGCGaauu-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.