miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8095 5' -53.1 NC_001978.2 + 18921 0.66 0.752233
Target:  5'- cGUGACGA-CGACGGgcagGCUCAgGCGCu-- -3'
miRNA:   3'- -CACUGUUcGCUGCC----UGAGU-UGCGcaa -5'
8095 5' -53.1 NC_001978.2 + 23967 0.66 0.741358
Target:  5'- -aGcACAGcGCGACGGGCUucCGGCGgGUa -3'
miRNA:   3'- caC-UGUU-CGCUGCCUGA--GUUGCgCAa -5'
8095 5' -53.1 NC_001978.2 + 8903 0.66 0.741358
Target:  5'- aUGACGGGCGuGCGGcGCUCAGUGCc-- -3'
miRNA:   3'- cACUGUUCGC-UGCC-UGAGUUGCGcaa -5'
8095 5' -53.1 NC_001978.2 + 16988 0.66 0.730362
Target:  5'- uUGGCAAGCacguCGGACgcugccugauUCAGCGUGUc -3'
miRNA:   3'- cACUGUUCGcu--GCCUG----------AGUUGCGCAa -5'
8095 5' -53.1 NC_001978.2 + 30436 0.67 0.685434
Target:  5'- --cGCGAGCcgGGCGGcUUCGGCGCGUUc -3'
miRNA:   3'- cacUGUUCG--CUGCCuGAGUUGCGCAA- -5'
8095 5' -53.1 NC_001978.2 + 4617 0.67 0.662584
Target:  5'- -gGGCA-GCGACGGGCggaCGACGaCGa- -3'
miRNA:   3'- caCUGUuCGCUGCCUGa--GUUGC-GCaa -5'
8095 5' -53.1 NC_001978.2 + 30906 0.68 0.616607
Target:  5'- cUGAguGGCGcccAUGGACUCAAUGCa-- -3'
miRNA:   3'- cACUguUCGC---UGCCUGAGUUGCGcaa -5'
8095 5' -53.1 NC_001978.2 + 18597 0.68 0.616607
Target:  5'- -cGGC-AGCGuuACGGAUaUCAGCGCGUc -3'
miRNA:   3'- caCUGuUCGC--UGCCUG-AGUUGCGCAa -5'
8095 5' -53.1 NC_001978.2 + 38501 0.68 0.616607
Target:  5'- -aGACAAgGCGGCcGACcuUCAGCGCGa- -3'
miRNA:   3'- caCUGUU-CGCUGcCUG--AGUUGCGCaa -5'
8095 5' -53.1 NC_001978.2 + 27278 0.69 0.570859
Target:  5'- -cGGCGAGCGcauCGGACgUCGcccgguacucACGCGUUg -3'
miRNA:   3'- caCUGUUCGCu--GCCUG-AGU----------UGCGCAA- -5'
8095 5' -53.1 NC_001978.2 + 8000 0.69 0.559534
Target:  5'- -cGACcGGCGuucCGGGCUCGACGUa-- -3'
miRNA:   3'- caCUGuUCGCu--GCCUGAGUUGCGcaa -5'
8095 5' -53.1 NC_001978.2 + 30020 0.69 0.548273
Target:  5'- -cGGCAAGgucguCGGCGGACUgggCGGCGCGa- -3'
miRNA:   3'- caCUGUUC-----GCUGCCUGA---GUUGCGCaa -5'
8095 5' -53.1 NC_001978.2 + 15528 0.69 0.548273
Target:  5'- -cGGCAAGguCGACGGAguugUUCAGCGUGUc -3'
miRNA:   3'- caCUGUUC--GCUGCCU----GAGUUGCGCAa -5'
8095 5' -53.1 NC_001978.2 + 3542 0.72 0.401256
Target:  5'- -gGGCGAGCccGAUGGACUC-ACGCGc- -3'
miRNA:   3'- caCUGUUCG--CUGCCUGAGuUGCGCaa -5'
8095 5' -53.1 NC_001978.2 + 258 0.72 0.391726
Target:  5'- -cGACGGGgGcaGCGGACUCAGCggcaGCGUUg -3'
miRNA:   3'- caCUGUUCgC--UGCCUGAGUUG----CGCAA- -5'
8095 5' -53.1 NC_001978.2 + 10211 0.72 0.364034
Target:  5'- -cGuCGGGCGuucaggcCGGACUCAACGCGg- -3'
miRNA:   3'- caCuGUUCGCu------GCCUGAGUUGCGCaa -5'
8095 5' -53.1 NC_001978.2 + 34030 0.74 0.304849
Target:  5'- gGUGGCGAcucGCG-CGGACUguACGCGUUc -3'
miRNA:   3'- -CACUGUU---CGCuGCCUGAguUGCGCAA- -5'
8095 5' -53.1 NC_001978.2 + 30002 0.75 0.26023
Target:  5'- aGUGAUcgAAGCGACcGACUC-ACGCGUUg -3'
miRNA:   3'- -CACUG--UUCGCUGcCUGAGuUGCGCAA- -5'
8095 5' -53.1 NC_001978.2 + 20817 0.78 0.153281
Target:  5'- gGUGACAAGCucGACGGACUgaaggaCGACGCGa- -3'
miRNA:   3'- -CACUGUUCG--CUGCCUGA------GUUGCGCaa -5'
8095 5' -53.1 NC_001978.2 + 14116 1.05 0.001959
Target:  5'- cGUGACAAGCGACGGACUCAACGCGUUc -3'
miRNA:   3'- -CACUGUUCGCUGCCUGAGUUGCGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.