miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8096 3' -59.6 NC_001978.2 + 22887 0.66 0.410925
Target:  5'- aGcCCAgCG-CGGGGaCGGCGGCGUUg -3'
miRNA:   3'- gC-GGUgGCaGUCCCcGUCGCUGCAAg -5'
8096 3' -59.6 NC_001978.2 + 11612 0.66 0.401747
Target:  5'- cCGUCACCGUgc-GGGCAGCGuCGc-- -3'
miRNA:   3'- -GCGGUGGCAgucCCCGUCGCuGCaag -5'
8096 3' -59.6 NC_001978.2 + 7272 0.66 0.392699
Target:  5'- aCGCCGCCGUCAGaagcgaaccGGCucCGGCGUc- -3'
miRNA:   3'- -GCGGUGGCAGUCc--------CCGucGCUGCAag -5'
8096 3' -59.6 NC_001978.2 + 1133 0.66 0.392699
Target:  5'- uGCCgaaguACCGggucGGGGUGGCGuugGCGUUCa -3'
miRNA:   3'- gCGG-----UGGCagu-CCCCGUCGC---UGCAAG- -5'
8096 3' -59.6 NC_001978.2 + 1684 0.66 0.383786
Target:  5'- gCGCCugauuGCgGUCGuuGGcGGCAGCGAUGaUCu -3'
miRNA:   3'- -GCGG-----UGgCAGU--CC-CCGUCGCUGCaAG- -5'
8096 3' -59.6 NC_001978.2 + 21627 0.67 0.357862
Target:  5'- uGCUgacccgacgggGCUGUUGGGGGCGGaGACGggCg -3'
miRNA:   3'- gCGG-----------UGGCAGUCCCCGUCgCUGCaaG- -5'
8096 3' -59.6 NC_001978.2 + 31346 0.68 0.325249
Target:  5'- aCGUCGCCGUCGGcguuGGCcGUGACGa-- -3'
miRNA:   3'- -GCGGUGGCAGUCc---CCGuCGCUGCaag -5'
8096 3' -59.6 NC_001978.2 + 3790 0.68 0.294897
Target:  5'- aCGCUACCaacucgacGUCAuGGGGCAGCGGg---- -3'
miRNA:   3'- -GCGGUGG--------CAGU-CCCCGUCGCUgcaag -5'
8096 3' -59.6 NC_001978.2 + 4121 0.68 0.294897
Target:  5'- uCGCCcaauCCGUCgggcAGGGGCgucaugucuucAGCGGCGcgCa -3'
miRNA:   3'- -GCGGu---GGCAG----UCCCCG-----------UCGCUGCaaG- -5'
8096 3' -59.6 NC_001978.2 + 19612 0.68 0.287662
Target:  5'- gGCCACCGUCcacccGGGC-GUGAUGUggUCg -3'
miRNA:   3'- gCGGUGGCAGuc---CCCGuCGCUGCA--AG- -5'
8096 3' -59.6 NC_001978.2 + 37813 0.69 0.280567
Target:  5'- gGUCGCCGUCGucGGGCAGCG-CGc-- -3'
miRNA:   3'- gCGGUGGCAGUc-CCCGUCGCuGCaag -5'
8096 3' -59.6 NC_001978.2 + 4601 0.69 0.266797
Target:  5'- cCGCgUGCuCGaCGGuGGGCAGCGACGggCg -3'
miRNA:   3'- -GCG-GUG-GCaGUC-CCCGUCGCUGCaaG- -5'
8096 3' -59.6 NC_001978.2 + 8812 0.69 0.266797
Target:  5'- aGCgCGCCgGUCGGGGGCgaAGCGGgGg-- -3'
miRNA:   3'- gCG-GUGG-CAGUCCCCG--UCGCUgCaag -5'
8096 3' -59.6 NC_001978.2 + 28054 0.69 0.253578
Target:  5'- uGCCGCCGUCcuGGGGC--UGACGcgggUCa -3'
miRNA:   3'- gCGGUGGCAGu-CCCCGucGCUGCa---AG- -5'
8096 3' -59.6 NC_001978.2 + 36956 0.69 0.247172
Target:  5'- uGCCgACCGgCAGcGGCAGCGACcucaaccggGUUCa -3'
miRNA:   3'- gCGG-UGGCaGUCcCCGUCGCUG---------CAAG- -5'
8096 3' -59.6 NC_001978.2 + 38098 0.7 0.240282
Target:  5'- gGCuCGCCGUCGucguccuGGGGCAGCG-CGc-- -3'
miRNA:   3'- gCG-GUGGCAGU-------CCCCGUCGCuGCaag -5'
8096 3' -59.6 NC_001978.2 + 14630 1.09 0.000275
Target:  5'- gCGCCACCGUCAGGGGCAGCGACGUUCu -3'
miRNA:   3'- -GCGGUGGCAGUCCCCGUCGCUGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.