miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8096 5' -51.1 NC_001978.2 + 29611 0.66 0.832748
Target:  5'- ----uGcCCGUACAUCUGAAGGaUGAc- -3'
miRNA:   3'- cacuuC-GGCAUGUGGACUUCC-ACUaa -5'
8096 5' -51.1 NC_001978.2 + 31310 0.66 0.823052
Target:  5'- uUGgcGCCG-ACGCgCUGAGuGGUGAc- -3'
miRNA:   3'- cACuuCGGCaUGUG-GACUU-CCACUaa -5'
8096 5' -51.1 NC_001978.2 + 17645 0.67 0.760496
Target:  5'- -cGGAGCCGU-CGCCcGGuacaAGGUGAc- -3'
miRNA:   3'- caCUUCGGCAuGUGGaCU----UCCACUaa -5'
8096 5' -51.1 NC_001978.2 + 22693 0.67 0.749463
Target:  5'- -aGAAGCUGUGCGCCguucuGAGGUaGUUg -3'
miRNA:   3'- caCUUCGGCAUGUGGac---UUCCAcUAA- -5'
8096 5' -51.1 NC_001978.2 + 8623 0.67 0.749463
Target:  5'- cUGAAGCUGa--ACCUGAAGGgGAa- -3'
miRNA:   3'- cACUUCGGCaugUGGACUUCCaCUaa -5'
8096 5' -51.1 NC_001978.2 + 39563 0.68 0.680888
Target:  5'- -cGcuGCCGU-CGCCgGAAGGUGGUc -3'
miRNA:   3'- caCuuCGGCAuGUGGaCUUCCACUAa -5'
8096 5' -51.1 NC_001978.2 + 21120 0.74 0.354088
Target:  5'- -aGAcGGCCG-ACGCgCUGAAGGUGAUUc -3'
miRNA:   3'- caCU-UCGGCaUGUG-GACUUCCACUAA- -5'
8096 5' -51.1 NC_001978.2 + 40386 0.75 0.327706
Target:  5'- --cGAGCCGUugACCUGggGGaagUGAUg -3'
miRNA:   3'- cacUUCGGCAugUGGACuuCC---ACUAa -5'
8096 5' -51.1 NC_001978.2 + 14595 1.07 0.002216
Target:  5'- cGUGAAGCCGUACACCUGAAGGUGAUUg -3'
miRNA:   3'- -CACUUCGGCAUGUGGACUUCCACUAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.