miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8098 3' -56.6 NC_001978.2 + 31417 0.66 0.602014
Target:  5'- gCCGCAACCCGGgacgCgaaagCGUGCAc -3'
miRNA:   3'- -GGCGUUGGGCCgcaaGagua-GCGCGU- -5'
8098 3' -56.6 NC_001978.2 + 10345 0.66 0.591011
Target:  5'- aUCGCuGCCauugucggguUGGuCGUUCUCAUCGUGg- -3'
miRNA:   3'- -GGCGuUGG----------GCC-GCAAGAGUAGCGCgu -5'
8098 3' -56.6 NC_001978.2 + 26356 0.66 0.591011
Target:  5'- gCCGC-GCCCauGGCGUgaaUCUCcugacgcaCGCGCGu -3'
miRNA:   3'- -GGCGuUGGG--CCGCA---AGAGua------GCGCGU- -5'
8098 3' -56.6 NC_001978.2 + 15027 0.66 0.580043
Target:  5'- gCGCAAUCUGuGC-UUCggcuUCGUCGCGCc -3'
miRNA:   3'- gGCGUUGGGC-CGcAAG----AGUAGCGCGu -5'
8098 3' -56.6 NC_001978.2 + 30437 0.66 0.580043
Target:  5'- aCGCgAGCCgGGCGgcUUCggCGCGUu -3'
miRNA:   3'- gGCG-UUGGgCCGCaaGAGuaGCGCGu -5'
8098 3' -56.6 NC_001978.2 + 20418 0.66 0.569119
Target:  5'- uCCGgGGugaCCGGCGUcagcuccgUCUC-UCGCGCc -3'
miRNA:   3'- -GGCgUUg--GGCCGCA--------AGAGuAGCGCGu -5'
8098 3' -56.6 NC_001978.2 + 8133 0.66 0.569119
Target:  5'- aCCGCGACCCGaagucgagcaaGCGUUaC-CGUcCGgGCAa -3'
miRNA:   3'- -GGCGUUGGGC-----------CGCAA-GaGUA-GCgCGU- -5'
8098 3' -56.6 NC_001978.2 + 6878 0.66 0.569119
Target:  5'- cCCGgGACCgacacaagguCGGCGUUCaCGgcaGCGCAa -3'
miRNA:   3'- -GGCgUUGG----------GCCGCAAGaGUag-CGCGU- -5'
8098 3' -56.6 NC_001978.2 + 23188 0.66 0.547433
Target:  5'- gCGgGGCaaGGuCGUUCcCGUCGCGCu -3'
miRNA:   3'- gGCgUUGggCC-GCAAGaGUAGCGCGu -5'
8098 3' -56.6 NC_001978.2 + 35473 0.67 0.511213
Target:  5'- uCCGCAGCaaCGGCGUUCggccugggaGCGCu -3'
miRNA:   3'- -GGCGUUGg-GCCGCAAGaguag----CGCGu -5'
8098 3' -56.6 NC_001978.2 + 1064 0.68 0.473993
Target:  5'- -aGUAACCCGGCGUgcgguaaagCUCuUCGCcccggaGCAc -3'
miRNA:   3'- ggCGUUGGGCCGCAa--------GAGuAGCG------CGU- -5'
8098 3' -56.6 NC_001978.2 + 36408 0.68 0.473993
Target:  5'- aUCGuUGAUgCGGCGUUCaUCAUgGCGCu -3'
miRNA:   3'- -GGC-GUUGgGCCGCAAG-AGUAgCGCGu -5'
8098 3' -56.6 NC_001978.2 + 28834 0.68 0.45391
Target:  5'- aUGUGAUCCGGgGcgUCUCcgacaAUCGCGCGg -3'
miRNA:   3'- gGCGUUGGGCCgCa-AGAG-----UAGCGCGU- -5'
8098 3' -56.6 NC_001978.2 + 23059 0.68 0.45391
Target:  5'- uCgGCAACCCgGGCGgua-CAaCGCGCAa -3'
miRNA:   3'- -GgCGUUGGG-CCGCaagaGUaGCGCGU- -5'
8098 3' -56.6 NC_001978.2 + 24057 0.68 0.434299
Target:  5'- aCGCGACCCGuuGCGgga--AUCGCGCc -3'
miRNA:   3'- gGCGUUGGGC--CGCaagagUAGCGCGu -5'
8098 3' -56.6 NC_001978.2 + 1410 0.69 0.424679
Target:  5'- uUCGCGACCCGGUaaccCUCAcugggaaccgUCGCGUc -3'
miRNA:   3'- -GGCGUUGGGCCGcaa-GAGU----------AGCGCGu -5'
8098 3' -56.6 NC_001978.2 + 4819 0.69 0.415187
Target:  5'- aCGUugcCCCGGC-UUCUCAUuucgaCGCGCGu -3'
miRNA:   3'- gGCGuu-GGGCCGcAAGAGUA-----GCGCGU- -5'
8098 3' -56.6 NC_001978.2 + 30301 0.69 0.38751
Target:  5'- uUCGuCGGcCCCGGCGUUgC-CGUUGCGCu -3'
miRNA:   3'- -GGC-GUU-GGGCCGCAA-GaGUAGCGCGu -5'
8098 3' -56.6 NC_001978.2 + 3621 0.7 0.369746
Target:  5'- gCCGCuAACuCCGGCGUcgaCAaCGCGCAc -3'
miRNA:   3'- -GGCG-UUG-GGCCGCAagaGUaGCGCGU- -5'
8098 3' -56.6 NC_001978.2 + 28354 0.7 0.361075
Target:  5'- gCGCgAGCCCGGCGcgUUgCAUguaCGCGCAc -3'
miRNA:   3'- gGCG-UUGGGCCGCa-AGaGUA---GCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.