miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 3' -53.6 NC_001978.2 + 511 0.67 0.670898
Target:  5'- cCUGAAGCGC-GUauGCGCc-UGGGCa -3'
miRNA:   3'- cGACUUCGUGcCAgcUGCGuuACCCG- -5'
8099 3' -53.6 NC_001978.2 + 5993 0.66 0.701114
Target:  5'- cCUucAGCGCGccgacggucuucuuGUCGACGCccgGGGCg -3'
miRNA:   3'- cGAcuUCGUGC--------------CAGCUGCGuuaCCCG- -5'
8099 3' -53.6 NC_001978.2 + 8809 0.66 0.748067
Target:  5'- --cGAAGCGCgccGGUCgGGgGCGAagcggGGGCa -3'
miRNA:   3'- cgaCUUCGUG---CCAG-CUgCGUUa----CCCG- -5'
8099 3' -53.6 NC_001978.2 + 9037 0.67 0.679891
Target:  5'- cGCUGAGGCGCuugagcgggaagccGGgaaCGACGUccuugccgcccaguUGGGCg -3'
miRNA:   3'- -CGACUUCGUG--------------CCa--GCUGCGuu------------ACCCG- -5'
8099 3' -53.6 NC_001978.2 + 9217 0.7 0.492973
Target:  5'- gGCcGGAGCgACGGcCGACGaCAAUGG-Cg -3'
miRNA:   3'- -CGaCUUCG-UGCCaGCUGC-GUUACCcG- -5'
8099 3' -53.6 NC_001978.2 + 9284 0.72 0.410995
Target:  5'- gGCgacGAAGUugGGcCGACGuCGAaugccguUGGGCa -3'
miRNA:   3'- -CGa--CUUCGugCCaGCUGC-GUU-------ACCCG- -5'
8099 3' -53.6 NC_001978.2 + 9777 0.67 0.657364
Target:  5'- uGCUGAAGCucgacccgucguCGGccguugaGACGC--UGGGCa -3'
miRNA:   3'- -CGACUUCGu-----------GCCag-----CUGCGuuACCCG- -5'
8099 3' -53.6 NC_001978.2 + 10578 0.67 0.693321
Target:  5'- aCUGAA-CGCGGUCGucaauuuCGUGAagGGGCu -3'
miRNA:   3'- cGACUUcGUGCCAGCu------GCGUUa-CCCG- -5'
8099 3' -53.6 NC_001978.2 + 11235 0.71 0.441395
Target:  5'- uCUGAcGUugGuUCaGCGCAAUGGGCu -3'
miRNA:   3'- cGACUuCGugCcAGcUGCGUUACCCG- -5'
8099 3' -53.6 NC_001978.2 + 12161 0.7 0.482427
Target:  5'- --gGggGCACGGcUgGGgGCGgcacGUGGGCa -3'
miRNA:   3'- cgaCuuCGUGCC-AgCUgCGU----UACCCG- -5'
8099 3' -53.6 NC_001978.2 + 13202 0.67 0.648321
Target:  5'- gGCUGAAGCgugucGgGGUCGGCaGCGucgaGcGGCa -3'
miRNA:   3'- -CGACUUCG-----UgCCAGCUG-CGUua--C-CCG- -5'
8099 3' -53.6 NC_001978.2 + 15186 0.7 0.503623
Target:  5'- cCUGGguuGGgACGGUCGAgCGCugaaGGGCa -3'
miRNA:   3'- cGACU---UCgUGCCAGCU-GCGuua-CCCG- -5'
8099 3' -53.6 NC_001978.2 + 15584 0.72 0.411955
Target:  5'- cGCUGGgacccgggacGGCAaCGuacGUCGGCGUAGUcGGGCg -3'
miRNA:   3'- -CGACU----------UCGU-GC---CAGCUGCGUUA-CCCG- -5'
8099 3' -53.6 NC_001978.2 + 15758 0.7 0.514373
Target:  5'- aGCUGAcgccgAGUGUGGUCGACaCAGugaacUGGGCg -3'
miRNA:   3'- -CGACU-----UCGUGCCAGCUGcGUU-----ACCCG- -5'
8099 3' -53.6 NC_001978.2 + 16790 1.15 0.000434
Target:  5'- gGCUGAAGCACGGUCGACGCAAUGGGCa -3'
miRNA:   3'- -CGACUUCGUGCCAGCUGCGUUACCCG- -5'
8099 3' -53.6 NC_001978.2 + 22582 0.66 0.704444
Target:  5'- aGCcgGucGCACGGaaGGCGUcg-GGGCg -3'
miRNA:   3'- -CGa-CuuCGUGCCagCUGCGuuaCCCG- -5'
8099 3' -53.6 NC_001978.2 + 24422 0.7 0.471991
Target:  5'- cGCUGAAGC-CGGgCGACaCGGUcuaucugaagccGGGCg -3'
miRNA:   3'- -CGACUUCGuGCCaGCUGcGUUA------------CCCG- -5'
8099 3' -53.6 NC_001978.2 + 24838 0.71 0.431448
Target:  5'- cGCUGggGCuacCGGUgcgccuacugCGACGCAAa-GGCg -3'
miRNA:   3'- -CGACuuCGu--GCCA----------GCUGCGUUacCCG- -5'
8099 3' -53.6 NC_001978.2 + 24959 0.66 0.704444
Target:  5'- cCUGAgcaagGGCGCGaa-GACGCuugccgAAUGGGCg -3'
miRNA:   3'- cGACU-----UCGUGCcagCUGCG------UUACCCG- -5'
8099 3' -53.6 NC_001978.2 + 26891 0.69 0.524126
Target:  5'- uGCUGAAGCGCgugacgGGUaaggacaaggucaCGGCGCGAuuccUGcGGCa -3'
miRNA:   3'- -CGACUUCGUG------CCA-------------GCUGCGUU----AC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.