miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 5' -56.9 NC_001978.2 + 13138 0.66 0.544128
Target:  5'- uGCCGACCccgacACGCUucagCCUgggcGUUCCGGc- -3'
miRNA:   3'- -CGGCUGGu----UGCGG----GGAa---CAAGGCCuu -5'
8100 5' -56.9 NC_001978.2 + 1803 0.66 0.533307
Target:  5'- cGCCGACaCGAC-CCgguaaguguuguCCUUGUaCCGGAu -3'
miRNA:   3'- -CGGCUG-GUUGcGG------------GGAACAaGGCCUu -5'
8100 5' -56.9 NC_001978.2 + 35573 0.66 0.511902
Target:  5'- aGCCGGagaCGGCGCCCCUgagcgUCGGc- -3'
miRNA:   3'- -CGGCUg--GUUGCGGGGAacaa-GGCCuu -5'
8100 5' -56.9 NC_001978.2 + 10142 0.67 0.490862
Target:  5'- gGUCGACUgAACGCCCCacugaaucaGcgCCGGAAg -3'
miRNA:   3'- -CGGCUGG-UUGCGGGGaa-------CaaGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 12867 0.67 0.470232
Target:  5'- uCUGAcCCGACGCCCCauaggUGUUCUGa-- -3'
miRNA:   3'- cGGCU-GGUUGCGGGGa----ACAAGGCcuu -5'
8100 5' -56.9 NC_001978.2 + 22271 0.67 0.459075
Target:  5'- cGCCGAcggcaacCCGACGCCggaCCgg--UCCGGGAa -3'
miRNA:   3'- -CGGCU-------GGUUGCGG---GGaacaAGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 17902 0.67 0.450052
Target:  5'- cGCCG-UCAGCGUCCUUg---CCGGAGu -3'
miRNA:   3'- -CGGCuGGUUGCGGGGAacaaGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 13845 0.68 0.439159
Target:  5'- cGCUGACCcuguauccgGGCGCCUucaagcccagcgaCUUcGUUCCGGGAg -3'
miRNA:   3'- -CGGCUGG---------UUGCGGG-------------GAA-CAAGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 37390 0.68 0.439159
Target:  5'- cGCCGACCAucgauaGCGCCgCUgaggcacUGaccgCCGGAGu -3'
miRNA:   3'- -CGGCUGGU------UGCGGgGA-------ACaa--GGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 22127 0.68 0.430359
Target:  5'- cGCUGAUCuGACGCCCUacGUcgagcacuUCCGGGAg -3'
miRNA:   3'- -CGGCUGG-UUGCGGGGaaCA--------AGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 32653 0.68 0.430359
Target:  5'- gGCCGACUgacgcuGACGCCCUggGggaagccgCCGGGc -3'
miRNA:   3'- -CGGCUGG------UUGCGGGGaaCaa------GGCCUu -5'
8100 5' -56.9 NC_001978.2 + 9277 0.68 0.420704
Target:  5'- cGUCGGCCGuCGCUCCgg---CCGGAAc -3'
miRNA:   3'- -CGGCUGGUuGCGGGGaacaaGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 35174 0.68 0.392541
Target:  5'- cGCCG-UCAGCGCCCCgguacgacggGUUCaGGAu -3'
miRNA:   3'- -CGGCuGGUUGCGGGGaa--------CAAGgCCUu -5'
8100 5' -56.9 NC_001978.2 + 2209 0.69 0.340025
Target:  5'- uGCCGA-CGACGaCCCgCUUGagCCGGGGg -3'
miRNA:   3'- -CGGCUgGUUGC-GGG-GAACaaGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 36733 0.7 0.311046
Target:  5'- aGCCGGagaCGGCGCCCCagGccguucaggacguccUUCCGGAGc -3'
miRNA:   3'- -CGGCUg--GUUGCGGGGaaC---------------AAGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 29025 0.7 0.300294
Target:  5'- uGCCGAauCCGGCGCCCUUgaacaccUUCCGGu- -3'
miRNA:   3'- -CGGCU--GGUUGCGGGGAac-----AAGGCCuu -5'
8100 5' -56.9 NC_001978.2 + 39976 0.71 0.264246
Target:  5'- aGCCGcuCUucCGCCCCUUGcugCCGGAGc -3'
miRNA:   3'- -CGGCu-GGuuGCGGGGAACaa-GGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 15957 0.71 0.257472
Target:  5'- cGCCGACuCGACGUUCCcgGUccccagggUCCGGAAg -3'
miRNA:   3'- -CGGCUG-GUUGCGGGGaaCA--------AGGCCUU- -5'
8100 5' -56.9 NC_001978.2 + 1091 0.74 0.176935
Target:  5'- gGCCGuuGCCGACGCCgCUUGcugggaagccUUCCGGGu -3'
miRNA:   3'- -CGGC--UGGUUGCGGgGAAC----------AAGGCCUu -5'
8100 5' -56.9 NC_001978.2 + 17365 1.08 0.000559
Target:  5'- cGCCGACCAACGCCCCUUGUUCCGGAAc -3'
miRNA:   3'- -CGGCUGGUUGCGGGGAACAAGGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.