Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8100 | 5' | -56.9 | NC_001978.2 | + | 13138 | 0.66 | 0.544128 |
Target: 5'- uGCCGACCccgacACGCUucagCCUgggcGUUCCGGc- -3' miRNA: 3'- -CGGCUGGu----UGCGG----GGAa---CAAGGCCuu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 1803 | 0.66 | 0.533307 |
Target: 5'- cGCCGACaCGAC-CCgguaaguguuguCCUUGUaCCGGAu -3' miRNA: 3'- -CGGCUG-GUUGcGG------------GGAACAaGGCCUu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 35573 | 0.66 | 0.511902 |
Target: 5'- aGCCGGagaCGGCGCCCCUgagcgUCGGc- -3' miRNA: 3'- -CGGCUg--GUUGCGGGGAacaa-GGCCuu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 10142 | 0.67 | 0.490862 |
Target: 5'- gGUCGACUgAACGCCCCacugaaucaGcgCCGGAAg -3' miRNA: 3'- -CGGCUGG-UUGCGGGGaa-------CaaGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 12867 | 0.67 | 0.470232 |
Target: 5'- uCUGAcCCGACGCCCCauaggUGUUCUGa-- -3' miRNA: 3'- cGGCU-GGUUGCGGGGa----ACAAGGCcuu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 22271 | 0.67 | 0.459075 |
Target: 5'- cGCCGAcggcaacCCGACGCCggaCCgg--UCCGGGAa -3' miRNA: 3'- -CGGCU-------GGUUGCGG---GGaacaAGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 17902 | 0.67 | 0.450052 |
Target: 5'- cGCCG-UCAGCGUCCUUg---CCGGAGu -3' miRNA: 3'- -CGGCuGGUUGCGGGGAacaaGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 13845 | 0.68 | 0.439159 |
Target: 5'- cGCUGACCcuguauccgGGCGCCUucaagcccagcgaCUUcGUUCCGGGAg -3' miRNA: 3'- -CGGCUGG---------UUGCGGG-------------GAA-CAAGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 37390 | 0.68 | 0.439159 |
Target: 5'- cGCCGACCAucgauaGCGCCgCUgaggcacUGaccgCCGGAGu -3' miRNA: 3'- -CGGCUGGU------UGCGGgGA-------ACaa--GGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 32653 | 0.68 | 0.430359 |
Target: 5'- gGCCGACUgacgcuGACGCCCUggGggaagccgCCGGGc -3' miRNA: 3'- -CGGCUGG------UUGCGGGGaaCaa------GGCCUu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 22127 | 0.68 | 0.430359 |
Target: 5'- cGCUGAUCuGACGCCCUacGUcgagcacuUCCGGGAg -3' miRNA: 3'- -CGGCUGG-UUGCGGGGaaCA--------AGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 9277 | 0.68 | 0.420704 |
Target: 5'- cGUCGGCCGuCGCUCCgg---CCGGAAc -3' miRNA: 3'- -CGGCUGGUuGCGGGGaacaaGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 35174 | 0.68 | 0.392541 |
Target: 5'- cGCCG-UCAGCGCCCCgguacgacggGUUCaGGAu -3' miRNA: 3'- -CGGCuGGUUGCGGGGaa--------CAAGgCCUu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 2209 | 0.69 | 0.340025 |
Target: 5'- uGCCGA-CGACGaCCCgCUUGagCCGGGGg -3' miRNA: 3'- -CGGCUgGUUGC-GGG-GAACaaGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 36733 | 0.7 | 0.311046 |
Target: 5'- aGCCGGagaCGGCGCCCCagGccguucaggacguccUUCCGGAGc -3' miRNA: 3'- -CGGCUg--GUUGCGGGGaaC---------------AAGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 29025 | 0.7 | 0.300294 |
Target: 5'- uGCCGAauCCGGCGCCCUUgaacaccUUCCGGu- -3' miRNA: 3'- -CGGCU--GGUUGCGGGGAac-----AAGGCCuu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 39976 | 0.71 | 0.264246 |
Target: 5'- aGCCGcuCUucCGCCCCUUGcugCCGGAGc -3' miRNA: 3'- -CGGCu-GGuuGCGGGGAACaa-GGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 15957 | 0.71 | 0.257472 |
Target: 5'- cGCCGACuCGACGUUCCcgGUccccagggUCCGGAAg -3' miRNA: 3'- -CGGCUG-GUUGCGGGGaaCA--------AGGCCUU- -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 1091 | 0.74 | 0.176935 |
Target: 5'- gGCCGuuGCCGACGCCgCUUGcugggaagccUUCCGGGu -3' miRNA: 3'- -CGGC--UGGUUGCGGgGAAC----------AAGGCCUu -5' |
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8100 | 5' | -56.9 | NC_001978.2 | + | 17365 | 1.08 | 0.000559 |
Target: 5'- cGCCGACCAACGCCCCUUGUUCCGGAAc -3' miRNA: 3'- -CGGCUGGUUGCGGGGAACAAGGCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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