Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8101 | 5' | -53.8 | NC_001978.2 | + | 15644 | 0.69 | 0.517434 |
Target: 5'- uUCCGGCGGCuuCGCUGggGCucgaCGGCGa- -3' miRNA: 3'- -GGGUUGCUG--GCGACuuUGc---GCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 12082 | 0.7 | 0.464433 |
Target: 5'- gCCAGuCGGCaaGCUGAGACGCGcCAUAg -3' miRNA: 3'- gGGUU-GCUGg-CGACUUUGCGCcGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 39043 | 0.7 | 0.464433 |
Target: 5'- gCCCGACGuaauCCGgUG-GugGUGGCGUGa -3' miRNA: 3'- -GGGUUGCu---GGCgACuUugCGCCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 30680 | 0.71 | 0.414404 |
Target: 5'- cCCCAGCGAcCCGaCUGAG-CGcCGGUAc- -3' miRNA: 3'- -GGGUUGCU-GGC-GACUUuGC-GCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 60 | 0.72 | 0.386022 |
Target: 5'- gCCAACGACCcgugugaacGCUGGGcaaGCGGCAc- -3' miRNA: 3'- gGGUUGCUGG---------CGACUUug-CGCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 638 | 0.72 | 0.376851 |
Target: 5'- gCUUAGCGcUUGCUG-AACGCGGCGUAc -3' miRNA: 3'- -GGGUUGCuGGCGACuUUGCGCCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 1034 | 0.72 | 0.358954 |
Target: 5'- uCCCGccgagaagcGCGACCGCaUGAAGCGCGaCGa- -3' miRNA: 3'- -GGGU---------UGCUGGCG-ACUUUGCGCcGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 1623 | 0.72 | 0.350231 |
Target: 5'- gCCAACGACCGCaaucAGGCGC-GCAUGg -3' miRNA: 3'- gGGUUGCUGGCGac--UUUGCGcCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 4636 | 0.73 | 0.316864 |
Target: 5'- -aCGACGACC-CUGAGACGgGGCu-- -3' miRNA: 3'- ggGUUGCUGGcGACUUUGCgCCGuau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 5495 | 0.74 | 0.293448 |
Target: 5'- gCCCAugGAaCGCUGAGuCGUGGCcgGg -3' miRNA: 3'- -GGGUugCUgGCGACUUuGCGCCGuaU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 9708 | 0.74 | 0.285948 |
Target: 5'- aCCCGgcggagcguaucGCGACCGCUGuGACGCucuucGGCAc- -3' miRNA: 3'- -GGGU------------UGCUGGCGACuUUGCG-----CCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 33046 | 0.74 | 0.285948 |
Target: 5'- cCCCAGCGucguaCGcCUGAAGCGCuucGGCGUAa -3' miRNA: 3'- -GGGUUGCug---GC-GACUUUGCG---CCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 37646 | 0.76 | 0.196374 |
Target: 5'- -aCAGCGuCCGcCUGAGugGCGGCAg- -3' miRNA: 3'- ggGUUGCuGGC-GACUUugCGCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 9789 | 0.8 | 0.11788 |
Target: 5'- aCCCGucguCGGCCGUUGAGACGCugGGCAa- -3' miRNA: 3'- -GGGUu---GCUGGCGACUUUGCG--CCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 17877 | 1.09 | 0.000985 |
Target: 5'- gCCCAACGACCGCUGAAACGCGGCAUAg -3' miRNA: 3'- -GGGUUGCUGGCGACUUUGCGCCGUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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