Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8102 | 3' | -54.9 | NC_001978.2 | + | 18467 | 0.66 | 0.640881 |
Target: 5'- cGGCGUUacccgggaaGUCCGgcuucacGGCCGUAGCGAc- -3' miRNA: 3'- -CCGCGAa--------CGGGUa------CCGGCAUUGCUag -5' |
|||||||
8102 | 3' | -54.9 | NC_001978.2 | + | 34225 | 0.66 | 0.652179 |
Target: 5'- cGGCGCUcaguUGCCCAcgugGGCaCGcuccGGCGGa- -3' miRNA: 3'- -CCGCGA----ACGGGUa---CCG-GCa---UUGCUag -5' |
|||||||
8102 | 3' | -54.9 | NC_001978.2 | + | 20969 | 0.66 | 0.663457 |
Target: 5'- cGgGCaaGCuCCGUccGGCCGUAGCGGg- -3' miRNA: 3'- cCgCGaaCG-GGUA--CCGGCAUUGCUag -5' |
|||||||
8102 | 3' | -54.9 | NC_001978.2 | + | 18047 | 1.13 | 0.000392 |
Target: 5'- aGGCGCUUGCCCAUGGCCGUAACGAUCg -3' miRNA: 3'- -CCGCGAACGGGUACCGGCAUUGCUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home