miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8102 5' -57.9 NC_001978.2 + 16421 0.68 0.386991
Target:  5'- cGAAgCGUGguCGGUcuACCCGGG--CGGCg -3'
miRNA:   3'- aCUUgGUAC--GCCG--UGGGCCCuuGCCG- -5'
8102 5' -57.9 NC_001978.2 + 33919 0.68 0.378078
Target:  5'- cGcACgGU-CGGCACCCGGGuaacgccguCGGCc -3'
miRNA:   3'- aCuUGgUAcGCCGUGGGCCCuu-------GCCG- -5'
8102 5' -57.9 NC_001978.2 + 27819 0.68 0.378078
Target:  5'- cUGAACCGUGCGcagcuuGUACCCGcuuGAguacAUGGCg -3'
miRNA:   3'- -ACUUGGUACGC------CGUGGGCc--CU----UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 12150 0.68 0.378078
Target:  5'- cGGuCCuuaucgGgGGCACggCUGGGGGCGGCa -3'
miRNA:   3'- aCUuGGua----CgCCGUG--GGCCCUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 30108 0.68 0.369303
Target:  5'- gGAGCCAUGCGcugagcCGCCuuaCGGGcAAgGGCg -3'
miRNA:   3'- aCUUGGUACGCc-----GUGG---GCCC-UUgCCG- -5'
8102 5' -57.9 NC_001978.2 + 23640 0.68 0.36067
Target:  5'- gGAACUugaaGCGGCcaaGCuCCGGGucguCGGCg -3'
miRNA:   3'- aCUUGGua--CGCCG---UG-GGCCCuu--GCCG- -5'
8102 5' -57.9 NC_001978.2 + 18980 0.68 0.359814
Target:  5'- cGAACCAUGCugaaGC-CCCGGucacgaaGAGCGcGCg -3'
miRNA:   3'- aCUUGGUACGc---CGuGGGCC-------CUUGC-CG- -5'
8102 5' -57.9 NC_001978.2 + 7883 0.69 0.352178
Target:  5'- cGuuCCGUGUGcucgACCCGGGcGACGGCg -3'
miRNA:   3'- aCuuGGUACGCcg--UGGGCCC-UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 34657 0.69 0.352178
Target:  5'- cUGAGCCccGuuGCACCCGGc-ACGGUu -3'
miRNA:   3'- -ACUUGGuaCgcCGUGGGCCcuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 38581 0.69 0.343828
Target:  5'- cGGGCaCGU-CGGCGuuCGGG-ACGGCg -3'
miRNA:   3'- aCUUG-GUAcGCCGUggGCCCuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 34725 0.69 0.335622
Target:  5'- cGAACCGUGCcgGGUGCaaCGGGGcucaguCGGCg -3'
miRNA:   3'- aCUUGGUACG--CCGUGg-GCCCUu-----GCCG- -5'
8102 5' -57.9 NC_001978.2 + 11484 0.69 0.327561
Target:  5'- cGAagGCCGUucggucggacGCuGCGCCCGGGaAACGGa -3'
miRNA:   3'- aCU--UGGUA----------CGcCGUGGGCCC-UUGCCg -5'
8102 5' -57.9 NC_001978.2 + 5817 0.69 0.327561
Target:  5'- --uACCGU-CGGCGCCCcGGAcaccuucaACGGCa -3'
miRNA:   3'- acuUGGUAcGCCGUGGGcCCU--------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 31504 0.69 0.319643
Target:  5'- cGAACCGgcggcuuccGCGuGCAcgcuuucgcguCCCGGGuuGCGGCg -3'
miRNA:   3'- aCUUGGUa--------CGC-CGU-----------GGGCCCu-UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 18471 0.69 0.311869
Target:  5'- aGAACg--GCGuuACCCGGGAAgucCGGCu -3'
miRNA:   3'- aCUUGguaCGCcgUGGGCCCUU---GCCG- -5'
8102 5' -57.9 NC_001978.2 + 37731 0.7 0.30424
Target:  5'- gGAGCCAUGaagGGCuauugcgcgcuGCCCGacGACGGCg -3'
miRNA:   3'- aCUUGGUACg--CCG-----------UGGGCccUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 25569 0.7 0.289415
Target:  5'- -uGACCc-GUGGCGCCCaGGGGcgugaccugaGCGGCa -3'
miRNA:   3'- acUUGGuaCGCCGUGGG-CCCU----------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 5238 0.7 0.281505
Target:  5'- aGGACCGUGCcuCACCCaGGuugcccgcacgaaGAACGGCg -3'
miRNA:   3'- aCUUGGUACGccGUGGG-CC-------------CUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 4352 0.71 0.24835
Target:  5'- -cGACCuggGCGGCuuCCGGGAAC-GCa -3'
miRNA:   3'- acUUGGua-CGCCGugGGCCCUUGcCG- -5'
8102 5' -57.9 NC_001978.2 + 37221 0.71 0.241994
Target:  5'- cGcGCCAUGUgcgaagaccuaGGCAUCgGGcGGACGGCg -3'
miRNA:   3'- aCuUGGUACG-----------CCGUGGgCC-CUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.