miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8103 3' -59.6 NC_001978.2 + 36011 0.66 0.380054
Target:  5'- aCGGguacucaGGCGa-GCCGCCUUCAGCGa-- -3'
miRNA:   3'- aGCC-------UCGCgaCGGCGGAAGUUGCcca -5'
8103 3' -59.6 NC_001978.2 + 30421 0.67 0.33038
Target:  5'- uUCGGcGCGUuccuUGCUGagucgcuugcCCUUCGGCGGGa -3'
miRNA:   3'- -AGCCuCGCG----ACGGC----------GGAAGUUGCCCa -5'
8103 3' -59.6 NC_001978.2 + 33521 0.67 0.329581
Target:  5'- -aGGAaaccgagugaagcGCGUUGCCGCUgcCAuuGCGGGUg -3'
miRNA:   3'- agCCU-------------CGCGACGGCGGaaGU--UGCCCA- -5'
8103 3' -59.6 NC_001978.2 + 21846 0.67 0.32245
Target:  5'- uUCGGcaCGUugUGCCccCCUUCAGCGGGUg -3'
miRNA:   3'- -AGCCucGCG--ACGGc-GGAAGUUGCCCA- -5'
8103 3' -59.6 NC_001978.2 + 15612 0.69 0.238338
Target:  5'- gCGGGGCGCU-CaCGCgUUCAACGGc- -3'
miRNA:   3'- aGCCUCGCGAcG-GCGgAAGUUGCCca -5'
8103 3' -59.6 NC_001978.2 + 37847 0.69 0.238338
Target:  5'- gUGGGGCGaagUGCC-CCUugUCGGCGGGg -3'
miRNA:   3'- aGCCUCGCg--ACGGcGGA--AGUUGCCCa -5'
8103 3' -59.6 NC_001978.2 + 12491 0.7 0.220399
Target:  5'- gCGGcAGUGCUGCCGUCUccgUCGGCGuucccGGUc -3'
miRNA:   3'- aGCC-UCGCGACGGCGGA---AGUUGC-----CCA- -5'
8103 3' -59.6 NC_001978.2 + 30110 0.7 0.220399
Target:  5'- gCGGAgccauGCGCUgaGCCGCCUU--ACGGGc -3'
miRNA:   3'- aGCCU-----CGCGA--CGGCGGAAguUGCCCa -5'
8103 3' -59.6 NC_001978.2 + 3068 0.71 0.198283
Target:  5'- gUCGGAGacgauugccaCGCUGCCGCUgagCAcguacagcaaGCGGGg -3'
miRNA:   3'- -AGCCUC----------GCGACGGCGGaa-GU----------UGCCCa -5'
8103 3' -59.6 NC_001978.2 + 17585 0.71 0.178127
Target:  5'- gCGGAGaCGgaGCCGCCcgCAACgucuGGGUa -3'
miRNA:   3'- aGCCUC-GCgaCGGCGGaaGUUG----CCCA- -5'
8103 3' -59.6 NC_001978.2 + 18700 1.07 0.000365
Target:  5'- uUCGGAGCGCUGCCGCCUUCAACGGGUc -3'
miRNA:   3'- -AGCCUCGCGACGGCGGAAGUUGCCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.