miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8104 5' -46.8 NC_001978.2 + 485 0.66 0.982552
Target:  5'- cGGGUGCGcgACC--GGCUg-ACCg-- -3'
miRNA:   3'- -CCCACGCaaUGGuuUCGAaaUGGaag -5'
8104 5' -46.8 NC_001978.2 + 35807 0.66 0.98013
Target:  5'- uGGGcgacgGCGUUGCCAAGGgCUUcGCa--- -3'
miRNA:   3'- -CCCa----CGCAAUGGUUUC-GAAaUGgaag -5'
8104 5' -46.8 NC_001978.2 + 2420 0.67 0.96416
Target:  5'- cGGGUGCGgaACCuugucGCUgacccgUACCg-- -3'
miRNA:   3'- -CCCACGCaaUGGuuu--CGAa-----AUGGaag -5'
8104 5' -46.8 NC_001978.2 + 34139 0.67 0.955772
Target:  5'- gGGuGUGCGUccGCCGGAGCg-UGCCc-- -3'
miRNA:   3'- -CC-CACGCAa-UGGUUUCGaaAUGGaag -5'
8104 5' -46.8 NC_001978.2 + 24967 0.68 0.945627
Target:  5'- aGGGcGCGaagacgcUUGCCGAaugGGCgcugACCUUCg -3'
miRNA:   3'- -CCCaCGC-------AAUGGUU---UCGaaa-UGGAAG- -5'
8104 5' -46.8 NC_001978.2 + 831 0.68 0.935226
Target:  5'- gGGGUcuGUacgGUUACCGGcucgucGGCUUcACCUUCg -3'
miRNA:   3'- -CCCA--CG---CAAUGGUU------UCGAAaUGGAAG- -5'
8104 5' -46.8 NC_001978.2 + 2858 0.69 0.916395
Target:  5'- cGGGUGCa----CGAAGacgUUGCCUUCg -3'
miRNA:   3'- -CCCACGcaaugGUUUCga-AAUGGAAG- -5'
8104 5' -46.8 NC_001978.2 + 28547 0.69 0.91017
Target:  5'- gGGGcGCGUgagccuaacccguugGCCGAAGCcgu-CCUUCg -3'
miRNA:   3'- -CCCaCGCAa--------------UGGUUUCGaaauGGAAG- -5'
8104 5' -46.8 NC_001978.2 + 13872 0.7 0.878531
Target:  5'- cGGGUGCGgcuccgGCCGucGCUauggcguaUGCCUUa -3'
miRNA:   3'- -CCCACGCaa----UGGUuuCGAa-------AUGGAAg -5'
8104 5' -46.8 NC_001978.2 + 9772 0.7 0.861228
Target:  5'- ---cGCGUUGCUGAAGCUcgACCcgUCg -3'
miRNA:   3'- cccaCGCAAUGGUUUCGAaaUGGa-AG- -5'
8104 5' -46.8 NC_001978.2 + 40895 0.77 0.501021
Target:  5'- uGGGUGCGUgcUCGAcGCUUUgcguacugGCCUUCa -3'
miRNA:   3'- -CCCACGCAauGGUUuCGAAA--------UGGAAG- -5'
8104 5' -46.8 NC_001978.2 + 19220 1.14 0.0023
Target:  5'- uGGGUGCGUUACCAAAGCUUUACCUUCg -3'
miRNA:   3'- -CCCACGCAAUGGUUUCGAAAUGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.