miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8105 5' -59.1 NC_001978.2 + 24295 0.66 0.434628
Target:  5'- cGGGCGgagcaauGCGCUUCG-UGCCgGGg- -3'
miRNA:   3'- cCCUGCau-----CGCGAGGCuACGGgCCaa -5'
8105 5' -59.1 NC_001978.2 + 8899 0.66 0.434628
Target:  5'- cGGGCGUgcGGCGCUCa-GUGCCCc--- -3'
miRNA:   3'- cCCUGCA--UCGCGAGgcUACGGGccaa -5'
8105 5' -59.1 NC_001978.2 + 25980 0.66 0.434628
Target:  5'- cGGGcACGUucAGCGCguacgcgUCGAuaccgUGCCCGGc- -3'
miRNA:   3'- -CCC-UGCA--UCGCGa------GGCU-----ACGGGCCaa -5'
8105 5' -59.1 NC_001978.2 + 22125 0.66 0.406357
Target:  5'- aGGuCGU-GCGCUUCGcUGCCCaGGUc -3'
miRNA:   3'- cCCuGCAuCGCGAGGCuACGGG-CCAa -5'
8105 5' -59.1 NC_001978.2 + 36478 0.67 0.369644
Target:  5'- uGGGcGCGUGgcccgucGCGUUCCGAUGgaucaCCGGUc -3'
miRNA:   3'- -CCC-UGCAU-------CGCGAGGCUACg----GGCCAa -5'
8105 5' -59.1 NC_001978.2 + 21888 0.68 0.345081
Target:  5'- uGGACGUagaAGCGCgagCCGc--CCCGGUa -3'
miRNA:   3'- cCCUGCA---UCGCGa--GGCuacGGGCCAa -5'
8105 5' -59.1 NC_001978.2 + 32714 0.68 0.328837
Target:  5'- aGGGCGUcAGCGUcagucggCCGGU-CCCGGUUg -3'
miRNA:   3'- cCCUGCA-UCGCGa------GGCUAcGGGCCAA- -5'
8105 5' -59.1 NC_001978.2 + 41406 0.68 0.32804
Target:  5'- gGGGGCGgGGCgGCUCCGAaguuggcggcgugUGCCCu--- -3'
miRNA:   3'- -CCCUGCaUCG-CGAGGCU-------------ACGGGccaa -5'
8105 5' -59.1 NC_001978.2 + 37247 0.69 0.298064
Target:  5'- cGGGCGgacGGCGCUCCGucagGUGCUCGcGa- -3'
miRNA:   3'- cCCUGCa--UCGCGAGGC----UACGGGC-Caa -5'
8105 5' -59.1 NC_001978.2 + 14718 0.69 0.2628
Target:  5'- cGGGACgGUAGUccaUCCGAUG-CCGGUa -3'
miRNA:   3'- -CCCUG-CAUCGcg-AGGCUACgGGCCAa -5'
8105 5' -59.1 NC_001978.2 + 871 0.73 0.142364
Target:  5'- uGGGuCG-AGUGCUCCGgcGCCUGGg- -3'
miRNA:   3'- -CCCuGCaUCGCGAGGCuaCGGGCCaa -5'
8105 5' -59.1 NC_001978.2 + 19409 1.08 0.00035
Target:  5'- cGGGACGUAGCGCUCCGAUGCCCGGUUg -3'
miRNA:   3'- -CCCUGCAUCGCGAGGCUACGGGCCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.