miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8106 5' -57.5 NC_001978.2 + 2077 0.66 0.494635
Target:  5'- gGUGGUCGAccGUcucacccaGCUUCGGCCCccaGGaCCGa -3'
miRNA:   3'- -CAUCAGCU--CG--------CGAAGCCGGG---UCaGGU- -5'
8106 5' -57.5 NC_001978.2 + 15198 0.66 0.463781
Target:  5'- -cGGUCGAGCGCUgaagggcaCGGUuaccuucaCgGGUCCGg -3'
miRNA:   3'- caUCAGCUCGCGAa-------GCCG--------GgUCAGGU- -5'
8106 5' -57.5 NC_001978.2 + 1347 0.67 0.453721
Target:  5'- -gGGUCGA---UUcCGGCCCAGUCCGc -3'
miRNA:   3'- caUCAGCUcgcGAaGCCGGGUCAGGU- -5'
8106 5' -57.5 NC_001978.2 + 20398 0.67 0.44378
Target:  5'- -aAGUCGAGuCGCgccggUCGGCCgAcGUCg- -3'
miRNA:   3'- caUCAGCUC-GCGa----AGCCGGgU-CAGgu -5'
8106 5' -57.5 NC_001978.2 + 3865 0.67 0.414715
Target:  5'- cGUGGcUUGAGCGCaUCGaaGCCgGGUUCAa -3'
miRNA:   3'- -CAUC-AGCUCGCGaAGC--CGGgUCAGGU- -5'
8106 5' -57.5 NC_001978.2 + 6367 0.68 0.395999
Target:  5'- ---aUCGGGCGCUUCaGCuUCAGUCUg -3'
miRNA:   3'- caucAGCUCGCGAAGcCG-GGUCAGGu -5'
8106 5' -57.5 NC_001978.2 + 27892 0.68 0.395999
Target:  5'- cGUAGUCG-GCgGCUUCGGCgaagcGUCCGc -3'
miRNA:   3'- -CAUCAGCuCG-CGAAGCCGggu--CAGGU- -5'
8106 5' -57.5 NC_001978.2 + 147 0.68 0.360244
Target:  5'- -gAGUCGAGCgaagagcccggaGCUUCGGaCCGGgaacgCCAa -3'
miRNA:   3'- caUCAGCUCG------------CGAAGCCgGGUCa----GGU- -5'
8106 5' -57.5 NC_001978.2 + 10254 0.71 0.253483
Target:  5'- -gGGUUGGGUGCUUauggGcGCUCAGUCCAu -3'
miRNA:   3'- caUCAGCUCGCGAAg---C-CGGGUCAGGU- -5'
8106 5' -57.5 NC_001978.2 + 6337 0.72 0.216333
Target:  5'- cGgcGUCGGGU-CUUCGGCCguGUCCc -3'
miRNA:   3'- -CauCAGCUCGcGAAGCCGGguCAGGu -5'
8106 5' -57.5 NC_001978.2 + 38527 0.72 0.210615
Target:  5'- -aAGUCGAGCGCgacggGGgCCGGUUCAg -3'
miRNA:   3'- caUCAGCUCGCGaag--CCgGGUCAGGU- -5'
8106 5' -57.5 NC_001978.2 + 22125 0.72 0.205027
Target:  5'- -aGGUCGuGCGCUUCGcuGCCCAGgUCGg -3'
miRNA:   3'- caUCAGCuCGCGAAGC--CGGGUCaGGU- -5'
8106 5' -57.5 NC_001978.2 + 19763 1.08 0.000435
Target:  5'- cGUAGUCGAGCGCUUCGGCCCAGUCCAu -3'
miRNA:   3'- -CAUCAGCUCGCGAAGCCGGGUCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.