miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8107 3' -55.4 NC_001978.2 + 15017 0.66 0.665977
Target:  5'- uUCUCAUC-ACGGaagUgCGGAaucuGCGCGa -3'
miRNA:   3'- -AGAGUAGuUGCCgcaAgGCCU----CGCGC- -5'
8107 3' -55.4 NC_001978.2 + 31715 0.66 0.654856
Target:  5'- -gUCGUCGGCGaaaGggCUGGGGUGCGu -3'
miRNA:   3'- agAGUAGUUGCcg-CaaGGCCUCGCGC- -5'
8107 3' -55.4 NC_001978.2 + 25559 0.66 0.632561
Target:  5'- ----uUCGACGGCGUgacCCGuGGCGCc -3'
miRNA:   3'- agaguAGUUGCCGCAa--GGCcUCGCGc -5'
8107 3' -55.4 NC_001978.2 + 33843 0.67 0.576987
Target:  5'- -gUCGggcCGACGGCGUUacCCGGGugccgaccguGCGCGu -3'
miRNA:   3'- agAGUa--GUUGCCGCAA--GGCCU----------CGCGC- -5'
8107 3' -55.4 NC_001978.2 + 13183 0.67 0.565977
Target:  5'- gCUCcgCGACGGCGaacccgaCUGGGGCGg- -3'
miRNA:   3'- aGAGuaGUUGCCGCaa-----GGCCUCGCgc -5'
8107 3' -55.4 NC_001978.2 + 5274 0.67 0.555021
Target:  5'- gCUCAUCGcucaggcuguCGaGCGUUCCGcGAucauGCGCGg -3'
miRNA:   3'- aGAGUAGUu---------GC-CGCAAGGC-CU----CGCGC- -5'
8107 3' -55.4 NC_001978.2 + 30303 0.68 0.533307
Target:  5'- uUUUCGUCGGCcccGGCGUUgCCGuuGCGCu -3'
miRNA:   3'- -AGAGUAGUUG---CCGCAA-GGCcuCGCGc -5'
8107 3' -55.4 NC_001978.2 + 30220 0.68 0.522562
Target:  5'- cUCgaacgCGUCAACGGuCGUgUCCGuGaAGCGCu -3'
miRNA:   3'- -AGa----GUAGUUGCC-GCA-AGGC-C-UCGCGc -5'
8107 3' -55.4 NC_001978.2 + 37496 0.68 0.511902
Target:  5'- cUUCGUCGGCGuaGg--CGGAGCGCa -3'
miRNA:   3'- aGAGUAGUUGCcgCaagGCCUCGCGc -5'
8107 3' -55.4 NC_001978.2 + 14916 0.68 0.508722
Target:  5'- uUCUCGUCuaucagcGCGuGCGUaCCGGcacgggcaacguauGGCGCGa -3'
miRNA:   3'- -AGAGUAGu------UGC-CGCAaGGCC--------------UCGCGC- -5'
8107 3' -55.4 NC_001978.2 + 36053 0.68 0.501334
Target:  5'- ---gGUCGGCGGCaGUcUCCGGGGUGUc -3'
miRNA:   3'- agagUAGUUGCCG-CA-AGGCCUCGCGc -5'
8107 3' -55.4 NC_001978.2 + 24569 0.69 0.480493
Target:  5'- gUUCGUCGGCGGCGUcauggUCGGcauaugugucGGCGUGc -3'
miRNA:   3'- aGAGUAGUUGCCGCAa----GGCC----------UCGCGC- -5'
8107 3' -55.4 NC_001978.2 + 4832 0.69 0.460084
Target:  5'- uUCUCAuuUCGACGcGCGUUCCcuuguucGCGCGc -3'
miRNA:   3'- -AGAGU--AGUUGC-CGCAAGGccu----CGCGC- -5'
8107 3' -55.4 NC_001978.2 + 39867 0.69 0.440143
Target:  5'- gCUCuUCAAgGGCGUUCagGGcgucGGCGCGc -3'
miRNA:   3'- aGAGuAGUUgCCGCAAGg-CC----UCGCGC- -5'
8107 3' -55.4 NC_001978.2 + 5901 0.7 0.430359
Target:  5'- gUCUCAaCGACcuugccguugaaGGUG-UCCGGGGCGCc -3'
miRNA:   3'- -AGAGUaGUUG------------CCGCaAGGCCUCGCGc -5'
8107 3' -55.4 NC_001978.2 + 6013 0.7 0.420704
Target:  5'- uUCUUGUCGACGc----CCGGGGCGCGa -3'
miRNA:   3'- -AGAGUAGUUGCcgcaaGGCCUCGCGC- -5'
8107 3' -55.4 NC_001978.2 + 35472 0.72 0.323689
Target:  5'- gUCcgCAgCAACGGCGUUCggccugGGAGCGCu -3'
miRNA:   3'- -AGa-GUaGUUGCCGCAAGg-----CCUCGCGc -5'
8107 3' -55.4 NC_001978.2 + 19965 1.09 0.000757
Target:  5'- uUCUCAUCAACGGCGUUCCGGAGCGCGu -3'
miRNA:   3'- -AGAGUAGUUGCCGCAAGGCCUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.