miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8108 3' -57.6 NC_001978.2 + 4287 0.66 0.518418
Target:  5'- cGCGCGUCGGaugacgGGCGcauuucuauGCGCGggUa--- -3'
miRNA:   3'- -UGCGCAGCCg-----CCGU---------CGCGCuuAcuac -5'
8108 3' -57.6 NC_001978.2 + 16424 0.66 0.517359
Target:  5'- aGCGUgGUCGGUcuacccgGGCGGCGUG-GUGAa- -3'
miRNA:   3'- -UGCG-CAGCCG-------CCGUCGCGCuUACUac -5'
8108 3' -57.6 NC_001978.2 + 16724 0.66 0.501569
Target:  5'- aGCGCGcCGGuUuccugcccagccuggGGCAGUGCGAcgGAa- -3'
miRNA:   3'- -UGCGCaGCC-G---------------CCGUCGCGCUuaCUac -5'
8108 3' -57.6 NC_001978.2 + 33204 0.66 0.497394
Target:  5'- -aGCGUCGGCGGCAaCGUGc------ -3'
miRNA:   3'- ugCGCAGCCGCCGUcGCGCuuacuac -5'
8108 3' -57.6 NC_001978.2 + 3144 0.66 0.476761
Target:  5'- uACGUGcUCaGCGGCAGCGUGGc----- -3'
miRNA:   3'- -UGCGC-AGcCGCCGUCGCGCUuacuac -5'
8108 3' -57.6 NC_001978.2 + 25458 0.67 0.466604
Target:  5'- gGCGUaGUCGGCGGCAuCcUGggUGAg- -3'
miRNA:   3'- -UGCG-CAGCCGCCGUcGcGCuuACUac -5'
8108 3' -57.6 NC_001978.2 + 36056 0.67 0.456561
Target:  5'- cCGgGUCGGCGGCAGUcucCGg--GGUGu -3'
miRNA:   3'- uGCgCAGCCGCCGUCGc--GCuuaCUAC- -5'
8108 3' -57.6 NC_001978.2 + 29094 0.67 0.43683
Target:  5'- gGCGuCGUCGcGuUGGCAGCGUGAAg---- -3'
miRNA:   3'- -UGC-GCAGC-C-GCCGUCGCGCUUacuac -5'
8108 3' -57.6 NC_001978.2 + 24520 0.68 0.408178
Target:  5'- gGCGCGUCGGUuguguGGUGGgGaGAGUGAg- -3'
miRNA:   3'- -UGCGCAGCCG-----CCGUCgCgCUUACUac -5'
8108 3' -57.6 NC_001978.2 + 1675 0.68 0.398892
Target:  5'- uGCGguCGUUGGCGGCAGCG---AUGAUc -3'
miRNA:   3'- -UGC--GCAGCCGCCGUCGCgcuUACUAc -5'
8108 3' -57.6 NC_001978.2 + 30014 0.68 0.37186
Target:  5'- -gGuCGUCGGCggacugGGCGGCGCGAAUc--- -3'
miRNA:   3'- ugC-GCAGCCG------CCGUCGCGCUUAcuac -5'
8108 3' -57.6 NC_001978.2 + 18587 0.69 0.346102
Target:  5'- gGCGCGUCucCGGCAGCGUuAcgGAUa -3'
miRNA:   3'- -UGCGCAGccGCCGUCGCGcUuaCUAc -5'
8108 3' -57.6 NC_001978.2 + 23655 0.69 0.321648
Target:  5'- aGCGCGUCGGCaagGGUGGCGCu-GUGc-- -3'
miRNA:   3'- -UGCGCAGCCG---CCGUCGCGcuUACuac -5'
8108 3' -57.6 NC_001978.2 + 16167 0.7 0.29851
Target:  5'- cCGaCGUCGGCaGCGGCaaGggUGAUa -3'
miRNA:   3'- uGC-GCAGCCGcCGUCGcgCuuACUAc -5'
8108 3' -57.6 NC_001978.2 + 13196 0.72 0.23073
Target:  5'- aGCGUGUCGGgguCGGCAGCGuCGAGcGGc- -3'
miRNA:   3'- -UGCGCAGCC---GCCGUCGC-GCUUaCUac -5'
8108 3' -57.6 NC_001978.2 + 21299 1.07 0.000579
Target:  5'- aACGCGUCGGCGGCAGCGCGAAUGAUGc -3'
miRNA:   3'- -UGCGCAGCCGCCGUCGCGCUUACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.