miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8109 3' -50 NC_001978.2 + 40485 0.68 0.812713
Target:  5'- aUCACAGCGUCACccgggCGcccuUCGCUguGa -3'
miRNA:   3'- cAGUGUCGCAGUGaa---GU----AGUGAguCg -5'
8109 3' -50 NC_001978.2 + 40461 0.71 0.645998
Target:  5'- cGUCACAGCaUCACUUCccccagGUCAa-CGGCu -3'
miRNA:   3'- -CAGUGUCGcAGUGAAG------UAGUgaGUCG- -5'
8109 3' -50 NC_001978.2 + 40239 0.7 0.692621
Target:  5'- -cCugGGCGUCGuCUucgucgUCGUCGgUCGGCg -3'
miRNA:   3'- caGugUCGCAGU-GA------AGUAGUgAGUCG- -5'
8109 3' -50 NC_001978.2 + 39761 0.68 0.7818
Target:  5'- -cCACAGaagcgccaaCGUCuCUUCGUCGCcuUCGGCg -3'
miRNA:   3'- caGUGUC---------GCAGuGAAGUAGUG--AGUCG- -5'
8109 3' -50 NC_001978.2 + 36572 0.75 0.432606
Target:  5'- cGUgGCAGUG-CACUUgAUCGCUcCGGCg -3'
miRNA:   3'- -CAgUGUCGCaGUGAAgUAGUGA-GUCG- -5'
8109 3' -50 NC_001978.2 + 36501 0.71 0.645998
Target:  5'- uUCGCcaaCGUCcCUUCAgCGCUCAGCg -3'
miRNA:   3'- cAGUGuc-GCAGuGAAGUaGUGAGUCG- -5'
8109 3' -50 NC_001978.2 + 35974 0.67 0.868426
Target:  5'- cGUCuCAGCGUCGgCUUCGUgGUUguGCc -3'
miRNA:   3'- -CAGuGUCGCAGU-GAAGUAgUGAguCG- -5'
8109 3' -50 NC_001978.2 + 33316 0.68 0.802607
Target:  5'- -gUACAGC-UCACUUgcCAUCACUCccgaacGGCg -3'
miRNA:   3'- caGUGUCGcAGUGAA--GUAGUGAG------UCG- -5'
8109 3' -50 NC_001978.2 + 32716 0.68 0.7818
Target:  5'- -cCAgGGCGUCAg--CGUCAgUCGGCc -3'
miRNA:   3'- caGUgUCGCAGUgaaGUAGUgAGUCG- -5'
8109 3' -50 NC_001978.2 + 31152 0.66 0.88487
Target:  5'- -gCGCccGGCGUUcg-UCAgUCGCUCAGCg -3'
miRNA:   3'- caGUG--UCGCAGugaAGU-AGUGAGUCG- -5'
8109 3' -50 NC_001978.2 + 31111 0.66 0.900141
Target:  5'- -gCACAGCGgcaagCGCcUCAgCACcggUCAGCu -3'
miRNA:   3'- caGUGUCGCa----GUGaAGUaGUG---AGUCG- -5'
8109 3' -50 NC_001978.2 + 30266 0.67 0.845393
Target:  5'- -gCACAGCGUC-CUUCAgugugccgucaacggUCGCguacacgUAGCg -3'
miRNA:   3'- caGUGUCGCAGuGAAGU---------------AGUGa------GUCG- -5'
8109 3' -50 NC_001978.2 + 30058 0.77 0.320617
Target:  5'- gGUCGCuuCGaUCACUUCG-CGCUCAGCg -3'
miRNA:   3'- -CAGUGucGC-AGUGAAGUaGUGAGUCG- -5'
8109 3' -50 NC_001978.2 + 24968 0.68 0.812713
Target:  5'- -gCGCAGCGUCGgCgccccccUUGCUCAGCg -3'
miRNA:   3'- caGUGUCGCAGU-Gaagu---AGUGAGUCG- -5'
8109 3' -50 NC_001978.2 + 24572 0.68 0.822604
Target:  5'- cGUCgGCGGCGUCAUggUCggCAUaugugUCGGCg -3'
miRNA:   3'- -CAG-UGUCGCAGUGa-AGuaGUG-----AGUCG- -5'
8109 3' -50 NC_001978.2 + 23991 0.67 0.841692
Target:  5'- -cCGaAGCGUCGag-CAcgcUCACUCAGCa -3'
miRNA:   3'- caGUgUCGCAGUgaaGU---AGUGAGUCG- -5'
8109 3' -50 NC_001978.2 + 23470 0.67 0.841692
Target:  5'- cGUCGCAGUGgUGCUUCAgcUUGCcguUCAGCc -3'
miRNA:   3'- -CAGUGUCGCaGUGAAGU--AGUG---AGUCG- -5'
8109 3' -50 NC_001978.2 + 22959 0.73 0.529991
Target:  5'- aGUCGC-GCGUCACgggCGUCACgaugAGCg -3'
miRNA:   3'- -CAGUGuCGCAGUGaa-GUAGUGag--UCG- -5'
8109 3' -50 NC_001978.2 + 22871 0.66 0.88487
Target:  5'- gGUCugA-CGUCGCUUCucgCGCUCAu- -3'
miRNA:   3'- -CAGugUcGCAGUGAAGua-GUGAGUcg -5'
8109 3' -50 NC_001978.2 + 22600 0.66 0.88487
Target:  5'- cGUCGgGGCG-CAUggugacCggCACUCAGCg -3'
miRNA:   3'- -CAGUgUCGCaGUGaa----GuaGUGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.