miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
811 5' -45.9 NC_000866.4 + 70938 1.06 0.041341
Target:  5'- gCUACUCGGCUUACGGCAAAGAUAUUUc -3'
miRNA:   3'- -GAUGAGCCGAAUGCCGUUUCUAUAAA- -5'
811 5' -45.9 NC_000866.4 + 89416 0.68 0.999674
Target:  5'- -gAUUCGGCUcauggaaauuauUugGGCAAGGAa---- -3'
miRNA:   3'- gaUGAGCCGA------------AugCCGUUUCUauaaa -5'
811 5' -45.9 NC_000866.4 + 23809 0.67 0.999921
Target:  5'- -aGCUgGGCUUucCGGCAaacaucacuaaauccAAGAUGUUUu -3'
miRNA:   3'- gaUGAgCCGAAu-GCCGU---------------UUCUAUAAA- -5'
811 5' -45.9 NC_000866.4 + 149652 0.67 0.999934
Target:  5'- -aACUUGGCguugAUGGU-AAGAUGUUUa -3'
miRNA:   3'- gaUGAGCCGaa--UGCCGuUUCUAUAAA- -5'
811 5' -45.9 NC_000866.4 + 65084 0.67 0.999884
Target:  5'- cCUACUUGGUacaaauacUACGGUAAGGcgAUUUa -3'
miRNA:   3'- -GAUGAGCCGa-------AUGCCGUUUCuaUAAA- -5'
811 5' -45.9 NC_000866.4 + 91081 0.71 0.993948
Target:  5'- -aGCUaauGCUUGCGGUAGAGAUAa-- -3'
miRNA:   3'- gaUGAgc-CGAAUGCCGUUUCUAUaaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.