miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8110 5' -55.4 NC_001978.2 + 2605 0.66 0.582805
Target:  5'- cGGCAcGCGUCGUacacgGCCugagUGGCa- -3'
miRNA:   3'- -CCGUuCGCAGCGa----CGGuagaACCGaa -5'
8110 5' -55.4 NC_001978.2 + 22043 0.66 0.571473
Target:  5'- cGCGGucGCG-CGCUGCCAUgUcGGCa- -3'
miRNA:   3'- cCGUU--CGCaGCGACGGUAgAaCCGaa -5'
8110 5' -55.4 NC_001978.2 + 33717 0.67 0.483436
Target:  5'- cGGCugAAGCGUCGUcgucuUGCCGUUguacaugGGCa- -3'
miRNA:   3'- -CCG--UUCGCAGCG-----ACGGUAGaa-----CCGaa -5'
8110 5' -55.4 NC_001978.2 + 11751 0.68 0.452093
Target:  5'- gGGCGAGCcgcaaCGCUGCCGUaCUgagugaagcGGCUUa -3'
miRNA:   3'- -CCGUUCGca---GCGACGGUA-GAa--------CCGAA- -5'
8110 5' -55.4 NC_001978.2 + 37512 0.7 0.365307
Target:  5'- cGCGAGCGUCGuCUGUCuUCgucGGCg- -3'
miRNA:   3'- cCGUUCGCAGC-GACGGuAGaa-CCGaa -5'
8110 5' -55.4 NC_001978.2 + 14559 0.71 0.293772
Target:  5'- cGCGAGaaCGUCGCUGCCccugacgguggcgcUCUUGGCa- -3'
miRNA:   3'- cCGUUC--GCAGCGACGGu-------------AGAACCGaa -5'
8110 5' -55.4 NC_001978.2 + 13107 0.72 0.274409
Target:  5'- gGGCAA-CGUCGCgauaacgucacCCGUCUUGGCUUc -3'
miRNA:   3'- -CCGUUcGCAGCGac---------GGUAGAACCGAA- -5'
8110 5' -55.4 NC_001978.2 + 22738 0.76 0.14591
Target:  5'- cGGCGucguguuCGUCGCUGCCGUCgucgGGCUc -3'
miRNA:   3'- -CCGUuc-----GCAGCGACGGUAGaa--CCGAa -5'
8110 5' -55.4 NC_001978.2 + 21998 1.08 0.000563
Target:  5'- cGGCAAGCGUCGCUGCCAUCUUGGCUUg -3'
miRNA:   3'- -CCGUUCGCAGCGACGGUAGAACCGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.