Results 41 - 43 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8111 | 3' | -52.3 | NC_001978.2 | + | 3603 | 0.66 | 0.80041 |
Target: 5'- aACCACA----GCGc-CCGGCAUGGCg -3' miRNA: 3'- -UGGUGUagcuUGCuaGGCCGUAUCGg -5' |
|||||||
8111 | 3' | -52.3 | NC_001978.2 | + | 2458 | 0.69 | 0.602108 |
Target: 5'- -aCACGUCGAGCG--CCGuGUGUAGCUc -3' miRNA: 3'- ugGUGUAGCUUGCuaGGC-CGUAUCGG- -5' |
|||||||
8111 | 3' | -52.3 | NC_001978.2 | + | 1047 | 0.72 | 0.439245 |
Target: 5'- gGCCAUGUCGAGCGuguaguaacCCGGCGU-GCg -3' miRNA: 3'- -UGGUGUAGCUUGCua-------GGCCGUAuCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home