miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 3' -52.3 NC_001978.2 + 19569 0.67 0.737527
Target:  5'- uCCGUGUCGAACG-UCCGGCcgugaagGGUCa -3'
miRNA:   3'- uGGUGUAGCUUGCuAGGCCGua-----UCGG- -5'
8111 3' -52.3 NC_001978.2 + 22141 0.66 0.790332
Target:  5'- cCUACGUCGAGCacuUCCGGgAguuccugaaGGCCg -3'
miRNA:   3'- uGGUGUAGCUUGcu-AGGCCgUa--------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 22294 1.13 0.000777
Target:  5'- gACCACAUCGAACGAUCCGGCAUAGCCg -3'
miRNA:   3'- -UGGUGUAGCUUGCUAGGCCGUAUCGG- -5'
8111 3' -52.3 NC_001978.2 + 22780 0.66 0.80041
Target:  5'- uGCCuuCGUCGucAUGAUCCugauuggcauguGGCAcGGCCa -3'
miRNA:   3'- -UGGu-GUAGCu-UGCUAGG------------CCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 23645 0.71 0.512709
Target:  5'- gACgACGUUGAGCGcgUCGGCAagggUGGCg -3'
miRNA:   3'- -UGgUGUAGCUUGCuaGGCCGU----AUCGg -5'
8111 3' -52.3 NC_001978.2 + 23778 0.67 0.759081
Target:  5'- uCCGCAUCGGgccACGcUUCGGCGUguacuccacaAGCUc -3'
miRNA:   3'- uGGUGUAGCU---UGCuAGGCCGUA----------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 25418 0.68 0.681866
Target:  5'- aGCCACAUgCGAAguCGGguuaCCGGCGc-GCCa -3'
miRNA:   3'- -UGGUGUA-GCUU--GCUa---GGCCGUauCGG- -5'
8111 3' -52.3 NC_001978.2 + 25485 0.72 0.438239
Target:  5'- gGCgACGUCGAGCccgaaccGGUCggCGGCGUAGUCg -3'
miRNA:   3'- -UGgUGUAGCUUG-------CUAG--GCCGUAUCGG- -5'
8111 3' -52.3 NC_001978.2 + 25962 0.68 0.715516
Target:  5'- -aCGCGUCGAuacCGugcCCGGCA-AGCCc -3'
miRNA:   3'- ugGUGUAGCUu--GCua-GGCCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 28227 0.67 0.748367
Target:  5'- gAUCACGUCGAGC---CCGGCGUaaaGGUUg -3'
miRNA:   3'- -UGGUGUAGCUUGcuaGGCCGUA---UCGG- -5'
8111 3' -52.3 NC_001978.2 + 30466 0.71 0.512709
Target:  5'- gACCuuGUCGAGCGAcaCGGCAcccuGCCa -3'
miRNA:   3'- -UGGugUAGCUUGCUagGCCGUau--CGG- -5'
8111 3' -52.3 NC_001978.2 + 32433 0.66 0.819027
Target:  5'- cGCCcuuccauGCGUCGAGCcGUUCGGCGgacGCUu -3'
miRNA:   3'- -UGG-------UGUAGCUUGcUAGGCCGUau-CGG- -5'
8111 3' -52.3 NC_001978.2 + 32509 0.67 0.768604
Target:  5'- aGCCACugggCGAGCGAcagaacgUCguaaGGCGUaAGCCc -3'
miRNA:   3'- -UGGUGua--GCUUGCU-------AGg---CCGUA-UCGG- -5'
8111 3' -52.3 NC_001978.2 + 33106 0.69 0.66371
Target:  5'- -gCGCA-CGGGCGGcuucgcgggcuugcuUCCGGCcGUAGCCc -3'
miRNA:   3'- ugGUGUaGCUUGCU---------------AGGCCG-UAUCGG- -5'
8111 3' -52.3 NC_001978.2 + 33138 0.66 0.790332
Target:  5'- aACCAUGUCGAcCGG-CgCGGCGUugGGCa -3'
miRNA:   3'- -UGGUGUAGCUuGCUaG-GCCGUA--UCGg -5'
8111 3' -52.3 NC_001978.2 + 33460 0.66 0.80041
Target:  5'- aGCCGCAUacaCGAACaGAUCaaggaaGCAUGGCg -3'
miRNA:   3'- -UGGUGUA---GCUUG-CUAGgc----CGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 36463 0.66 0.790332
Target:  5'- cGCCGCAUC-AACGAUcaagcCCaGCAcccAGCCg -3'
miRNA:   3'- -UGGUGUAGcUUGCUA-----GGcCGUa--UCGG- -5'
8111 3' -52.3 NC_001978.2 + 37786 0.69 0.636339
Target:  5'- uGCCGC-UCGAAUGGgucacCCaGCAUGGCg -3'
miRNA:   3'- -UGGUGuAGCUUGCUa----GGcCGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 38125 0.71 0.534641
Target:  5'- gACCGCGaacgccauUCGAGCGucaCCGGCuc-GCCg -3'
miRNA:   3'- -UGGUGU--------AGCUUGCua-GGCCGuauCGG- -5'
8111 3' -52.3 NC_001978.2 + 38251 0.68 0.715516
Target:  5'- cCCACccaGGGCGAuugcUCCGGCAcggggaAGCCg -3'
miRNA:   3'- uGGUGuagCUUGCU----AGGCCGUa-----UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.