miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 31228 0.69 0.436407
Target:  5'- uCCGACCG-GCCACAccgucaccacUCagcgcgUCGGCGC-Ca -3'
miRNA:   3'- -GGCUGGUgCGGUGU----------AGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 20503 0.7 0.336016
Target:  5'- gUCGGgCACGCCuucaaugucguugaaGUCUUCGGCGaCGUc -3'
miRNA:   3'- -GGCUgGUGCGGug-------------UAGAAGCCGC-GCG- -5'
8111 5' -56.8 NC_001978.2 + 709 0.7 0.380938
Target:  5'- gCCGugUACGCCGCGU--UCaGCaaGCGCu -3'
miRNA:   3'- -GGCugGUGCGGUGUAgaAGcCG--CGCG- -5'
8111 5' -56.8 NC_001978.2 + 20460 0.7 0.380938
Target:  5'- gCCGACCgGCGCgACucgaCUUCGGCcuuCGCc -3'
miRNA:   3'- -GGCUGG-UGCGgUGua--GAAGCCGc--GCG- -5'
8111 5' -56.8 NC_001978.2 + 36433 0.7 0.380938
Target:  5'- gCCgGACCAUGCC-CAUUcgCuGUGCGCg -3'
miRNA:   3'- -GG-CUGGUGCGGuGUAGaaGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23877 0.7 0.373033
Target:  5'- uCCGGCgACGCCGgGUCgagcgcugccacuagUCGGCaauCGCg -3'
miRNA:   3'- -GGCUGgUGCGGUgUAGa--------------AGCCGc--GCG- -5'
8111 5' -56.8 NC_001978.2 + 23705 0.7 0.338453
Target:  5'- gCCGA-CGCGCUcaacguCGUCUUCGGCuucGUGCa -3'
miRNA:   3'- -GGCUgGUGCGGu-----GUAGAAGCCG---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 36345 0.7 0.338453
Target:  5'- aCGACgACGCC-CuUCgUCaGCGCGCa -3'
miRNA:   3'- gGCUGgUGCGGuGuAGaAGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 22225 0.7 0.363524
Target:  5'- aCGGCUAUGCCGgAUCgUUCGauguggucauGCGCGUa -3'
miRNA:   3'- gGCUGGUGCGGUgUAG-AAGC----------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 24573 0.7 0.380938
Target:  5'- gUCGGCgGCGUCAUgGUCggcauaugugUCGGCGUGCu -3'
miRNA:   3'- -GGCUGgUGCGGUG-UAGa---------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 3743 0.7 0.363524
Target:  5'- uCCGGaaaUCGCGCga-AUCUUUGGCGUGCc -3'
miRNA:   3'- -GGCU---GGUGCGgugUAGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 38219 0.71 0.299518
Target:  5'- gCCGcGCCACGCCuucgggACGUCagCGGCuCGCc -3'
miRNA:   3'- -GGC-UGGUGCGG------UGUAGaaGCCGcGCG- -5'
8111 5' -56.8 NC_001978.2 + 10357 0.71 0.307019
Target:  5'- --aGCCACGCCGCcgCcaUUCGG-GCGCc -3'
miRNA:   3'- ggcUGGUGCGGUGuaG--AAGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 4895 0.71 0.321665
Target:  5'- gCGACCacucugaGCGCCAa--CUUUgaGGCGCGCg -3'
miRNA:   3'- gGCUGG-------UGCGGUguaGAAG--CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31667 0.71 0.314663
Target:  5'- gCCGACgACGCCcuuuaugacauuGCGUCguuugagCGGUGCGg -3'
miRNA:   3'- -GGCUGgUGCGG------------UGUAGaa-----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 26813 0.71 0.299518
Target:  5'- aCGACCuuGCCGCG-CUUCGugguuCGCGCc -3'
miRNA:   3'- gGCUGGugCGGUGUaGAAGCc----GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6093 0.71 0.296557
Target:  5'- gUGACCgucagaaccuucGCGCCccggGCGUCgacaagaagaccgUCGGCGCGCu -3'
miRNA:   3'- gGCUGG------------UGCGG----UGUAGa------------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 13433 0.71 0.329581
Target:  5'- uCCGuGCCaAUGCCGcCGUCUUCGuugcacaGCGCGUa -3'
miRNA:   3'- -GGC-UGG-UGCGGU-GUAGAAGC-------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 24916 0.72 0.270933
Target:  5'- gCCGACgCuGCGCacaACAUgCUUcCGGCGUGCg -3'
miRNA:   3'- -GGCUG-G-UGCGg--UGUA-GAA-GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6795 0.72 0.292159
Target:  5'- gUCGACCGgauUGCCcgGCGUCgugacaaCGGCGUGCg -3'
miRNA:   3'- -GGCUGGU---GCGG--UGUAGaa-----GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.