Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8111 | 5' | -56.8 | NC_001978.2 | + | 35871 | 0.68 | 0.446097 |
Target: 5'- -aGaACCuuGCCGuCGUCUUCGGCGUcagugaGCg -3' miRNA: 3'- ggC-UGGugCGGU-GUAGAAGCCGCG------CG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 6350 | 0.68 | 0.454919 |
Target: 5'- aCCGAaucguuuCCgGCGUCGgGUCUUCGGcCGUGUc -3' miRNA: 3'- -GGCU-------GG-UGCGGUgUAGAAGCC-GCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 19526 | 0.68 | 0.455905 |
Target: 5'- aCCGAUCguGCGCCcCAUCcaUUCGucacCGCGCg -3' miRNA: 3'- -GGCUGG--UGCGGuGUAG--AAGCc---GCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 38101 | 0.68 | 0.455905 |
Target: 5'- aCCGGCU-CGCCGuCGUCguccuggggCaGCGCGCa -3' miRNA: 3'- -GGCUGGuGCGGU-GUAGaa-------GcCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 1045 | 0.68 | 0.455905 |
Target: 5'- aCGGCCAUGUCgaGCGUgUaguaaccCGGCGUGCg -3' miRNA: 3'- gGCUGGUGCGG--UGUAgAa------GCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 12330 | 0.68 | 0.455905 |
Target: 5'- gCCGuCCGCuGCCgACGUCgUCaGCcGCGCa -3' miRNA: 3'- -GGCuGGUG-CGG-UGUAGaAGcCG-CGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 21201 | 0.68 | 0.455905 |
Target: 5'- gUCGACCugGgCGCGaaucacCUUCaGCGCGUc -3' miRNA: 3'- -GGCUGGugCgGUGUa-----GAAGcCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 20418 | 0.68 | 0.464832 |
Target: 5'- gCCGACguCGCCgaagacuucaacgACAUUgaaGGCGUGCc -3' miRNA: 3'- -GGCUGguGCGG-------------UGUAGaagCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 37206 | 0.68 | 0.465829 |
Target: 5'- aUGAUCACGUacgccgcuUGCGUCUUCGGUcccaugGCGCc -3' miRNA: 3'- gGCUGGUGCG--------GUGUAGAAGCCG------CGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 40008 | 0.68 | 0.465829 |
Target: 5'- cCCGACCG-GCCcuaaGUCguggugggGGCGCGCg -3' miRNA: 3'- -GGCUGGUgCGGug--UAGaag-----CCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 40209 | 0.68 | 0.475864 |
Target: 5'- gCGGCUuCGcCCACGUgaUCGaaGCGCGCu -3' miRNA: 3'- gGCUGGuGC-GGUGUAgaAGC--CGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 8616 | 0.68 | 0.475864 |
Target: 5'- aCGACaUACGCCauggcgcgaaGCAUCggggcaCGGCGCGa -3' miRNA: 3'- gGCUG-GUGCGG----------UGUAGaa----GCCGCGCg -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 35427 | 0.68 | 0.475864 |
Target: 5'- gUGACaCAUGCCcaACAagaUCacuUUCGGCGCGUc -3' miRNA: 3'- gGCUG-GUGCGG--UGU---AG---AAGCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 19365 | 0.68 | 0.483968 |
Target: 5'- cCCGACgGaCGCCgACGUgacgugcaagCGGUGCGCg -3' miRNA: 3'- -GGCUGgU-GCGG-UGUAgaa-------GCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 13655 | 0.68 | 0.486005 |
Target: 5'- gCGACuCGCGCCuauGCGg--UCGGCGC-Cg -3' miRNA: 3'- gGCUG-GUGCGG---UGUagaAGCCGCGcG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 4417 | 0.68 | 0.49009 |
Target: 5'- aCGugUACGCCACGUUcaaccacgacacgcgUUCccuacuGGgGCGCa -3' miRNA: 3'- gGCugGUGCGGUGUAG---------------AAG------CCgCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 22078 | 0.67 | 0.491114 |
Target: 5'- aCGACCuguuugaGCGCCugAUCcggggugaguacgUCGGCcguguGCGCg -3' miRNA: 3'- gGCUGG-------UGCGGugUAGa------------AGCCG-----CGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 15408 | 0.67 | 0.496247 |
Target: 5'- uCUGACCG----GCGUCgUUGGCGCGCg -3' miRNA: 3'- -GGCUGGUgcggUGUAGaAGCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 5626 | 0.67 | 0.496247 |
Target: 5'- gCGACCgGCGCCAacgcugcCUUCGGUGagGCu -3' miRNA: 3'- gGCUGG-UGCGGUgua----GAAGCCGCg-CG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 10043 | 0.67 | 0.500372 |
Target: 5'- gCCGACCGuCGCCAUAg--UCGacccgaugcccucaaGCGCGg -3' miRNA: 3'- -GGCUGGU-GCGGUGUagaAGC---------------CGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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