miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 20503 0.7 0.336016
Target:  5'- gUCGGgCACGCCuucaaugucguugaaGUCUUCGGCGaCGUc -3'
miRNA:   3'- -GGCUgGUGCGGug-------------UAGAAGCCGC-GCG- -5'
8111 5' -56.8 NC_001978.2 + 21201 0.68 0.455905
Target:  5'- gUCGACCugGgCGCGaaucacCUUCaGCGCGUc -3'
miRNA:   3'- -GGCUGGugCgGUGUa-----GAAGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 22078 0.67 0.491114
Target:  5'- aCGACCuguuugaGCGCCugAUCcggggugaguacgUCGGCcguguGCGCg -3'
miRNA:   3'- gGCUGG-------UGCGGugUAGa------------AGCCG-----CGCG- -5'
8111 5' -56.8 NC_001978.2 + 22225 0.7 0.363524
Target:  5'- aCGGCUAUGCCGgAUCgUUCGauguggucauGCGCGUa -3'
miRNA:   3'- gGCUGGUGCGGUgUAG-AAGC----------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 22260 1.14 0.000279
Target:  5'- uCCGACCACGCCACAUCUUCGGCGCGCa -3'
miRNA:   3'- -GGCUGGUGCGGUGUAGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23515 0.67 0.517016
Target:  5'- gCUGACCGa-UCAUcUCUucgUCGGCGUGCg -3'
miRNA:   3'- -GGCUGGUgcGGUGuAGA---AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23630 0.66 0.613879
Target:  5'- gCGGCCAagcuCCGgGUCgUCGGCGaGCg -3'
miRNA:   3'- gGCUGGUgc--GGUgUAGaAGCCGCgCG- -5'
8111 5' -56.8 NC_001978.2 + 23705 0.7 0.338453
Target:  5'- gCCGA-CGCGCUcaacguCGUCUUCGGCuucGUGCa -3'
miRNA:   3'- -GGCUgGUGCGGu-----GUAGAAGCCG---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 23778 0.78 0.102463
Target:  5'- uCCGcAUCGgGCCACG-CUUCGGCGUGUa -3'
miRNA:   3'- -GGC-UGGUgCGGUGUaGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23877 0.7 0.373033
Target:  5'- uCCGGCgACGCCGgGUCgagcgcugccacuagUCGGCaauCGCg -3'
miRNA:   3'- -GGCUGgUGCGGUgUAGa--------------AGCCGc--GCG- -5'
8111 5' -56.8 NC_001978.2 + 24573 0.7 0.380938
Target:  5'- gUCGGCgGCGUCAUgGUCggcauaugugUCGGCGUGCu -3'
miRNA:   3'- -GGCUGgUGCGGUG-UAGa---------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 24916 0.72 0.270933
Target:  5'- gCCGACgCuGCGCacaACAUgCUUcCGGCGUGCg -3'
miRNA:   3'- -GGCUG-G-UGCGg--UGUA-GAA-GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 25397 0.69 0.436407
Target:  5'- aCCGG-CGCGCCACuuaccAUCUUCGGCu--- -3'
miRNA:   3'- -GGCUgGUGCGGUG-----UAGAAGCCGcgcg -5'
8111 5' -56.8 NC_001978.2 + 25406 0.67 0.538124
Target:  5'- gCCGACUACGCCGCcgac-CGGUucGgGCu -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaaGCCG--CgCG- -5'
8111 5' -56.8 NC_001978.2 + 26519 0.72 0.264139
Target:  5'- gUCGACCACGCCguucGCGaagCUcaacaGGUGCGCg -3'
miRNA:   3'- -GGCUGGUGCGG----UGUa--GAag---CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 26813 0.71 0.299518
Target:  5'- aCGACCuuGCCGCG-CUUCGugguuCGCGCc -3'
miRNA:   3'- gGCUGGugCGGUGUaGAAGCc----GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 26910 0.66 0.60294
Target:  5'- cCCGACUcgccuucggACGCCAUGaCga-GGCGCGa -3'
miRNA:   3'- -GGCUGG---------UGCGGUGUaGaagCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 27264 0.66 0.592026
Target:  5'- gCCGACgACuCCGCgAUUgugUCGG-GCGCu -3'
miRNA:   3'- -GGCUGgUGcGGUG-UAGa--AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 28019 0.67 0.545583
Target:  5'- aCCGGCCucaaGCCGCucagugcguucuacGUCgacccgUCGGCGC-Cg -3'
miRNA:   3'- -GGCUGGug--CGGUG--------------UAGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 30444 0.73 0.220399
Target:  5'- cCCuGCCACGCgagccggGCggCUUCGGCGCGUu -3'
miRNA:   3'- -GGcUGGUGCGg------UGuaGAAGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.