miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 30492 0.66 0.60294
Target:  5'- cCCGACgGCGagauuCGCccgaagGUCggUCGGgGCGCa -3'
miRNA:   3'- -GGCUGgUGCg----GUG------UAGa-AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 30648 0.66 0.592026
Target:  5'- aUCGAgCACGCacgUACGggCUUCGGCGUc- -3'
miRNA:   3'- -GGCUgGUGCG---GUGUa-GAAGCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 31228 0.69 0.436407
Target:  5'- uCCGACCG-GCCACAccgucaccacUCagcgcgUCGGCGC-Ca -3'
miRNA:   3'- -GGCUGGUgCGGUGU----------AGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 31353 0.69 0.436407
Target:  5'- gCUGAUCACGUCGCcg--UCGGCGUugGCc -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaAGCCGCG--CG- -5'
8111 5' -56.8 NC_001978.2 + 31488 0.67 0.538124
Target:  5'- gCGugCACGCUuucGCGUCccggguugCGGCGCu- -3'
miRNA:   3'- gGCugGUGCGG---UGUAGaa------GCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 31667 0.71 0.314663
Target:  5'- gCCGACgACGCCcuuuaugacauuGCGUCguuugagCGGUGCGg -3'
miRNA:   3'- -GGCUGgUGCGG------------UGUAGaa-----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 32163 0.66 0.592026
Target:  5'- gCCGACCGgGgCGgacgggUAUCgaCGGaCGCGCg -3'
miRNA:   3'- -GGCUGGUgCgGU------GUAGaaGCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 32276 0.67 0.538124
Target:  5'- gCCGcucagccucaGCCguGCGCCAUccCUcagCGGUGCGCg -3'
miRNA:   3'- -GGC----------UGG--UGCGGUGuaGAa--GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 32895 0.73 0.220399
Target:  5'- gUCGACCACGCCgACA-CUgagcCGGuCGUGCc -3'
miRNA:   3'- -GGCUGGUGCGG-UGUaGAa---GCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 33132 0.66 0.60294
Target:  5'- gUCGACCgGCGCgGCGUUg--GGCaguaGCGCa -3'
miRNA:   3'- -GGCUGG-UGCGgUGUAGaagCCG----CGCG- -5'
8111 5' -56.8 NC_001978.2 + 34223 0.73 0.236491
Target:  5'- gCCGACCACGCUgagcgcaacgcgauACGUCaugcgccgUCGGCGgaGCu -3'
miRNA:   3'- -GGCUGGUGCGG--------------UGUAGa-------AGCCGCg-CG- -5'
8111 5' -56.8 NC_001978.2 + 35427 0.68 0.475864
Target:  5'- gUGACaCAUGCCcaACAagaUCacuUUCGGCGCGUc -3'
miRNA:   3'- gGCUG-GUGCGG--UGU---AG---AAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 35579 0.66 0.581146
Target:  5'- -aGACgGCGCCcCugagCgUCGGCGCGa -3'
miRNA:   3'- ggCUGgUGCGGuGua--GaAGCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 35585 0.67 0.538124
Target:  5'- gCGGgUAUGCC--GUCUcCGGCGCGUu -3'
miRNA:   3'- gGCUgGUGCGGugUAGAaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 35871 0.68 0.446097
Target:  5'- -aGaACCuuGCCGuCGUCUUCGGCGUcagugaGCg -3'
miRNA:   3'- ggC-UGGugCGGU-GUAGAAGCCGCG------CG- -5'
8111 5' -56.8 NC_001978.2 + 36078 0.67 0.527531
Target:  5'- aCgGGCCAcucaccCGCCgACAcCUg-GGCGCGCg -3'
miRNA:   3'- -GgCUGGU------GCGG-UGUaGAagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 36345 0.7 0.338453
Target:  5'- aCGACgACGCC-CuUCgUCaGCGCGCa -3'
miRNA:   3'- gGCUGgUGCGGuGuAGaAGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 36433 0.7 0.380938
Target:  5'- gCCgGACCAUGCC-CAUUcgCuGUGCGCg -3'
miRNA:   3'- -GG-CUGGUGCGGuGUAGaaGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 37206 0.68 0.465829
Target:  5'- aUGAUCACGUacgccgcuUGCGUCUUCGGUcccaugGCGCc -3'
miRNA:   3'- gGCUGGUGCG--------GUGUAGAAGCCG------CGCG- -5'
8111 5' -56.8 NC_001978.2 + 37295 0.66 0.570308
Target:  5'- uCCGcCCgAUGCCuAgGUCUUCgcacauGGCGCGUu -3'
miRNA:   3'- -GGCuGG-UGCGG-UgUAGAAG------CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.