miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 37536 0.67 0.54772
Target:  5'- gCCGACCACGUugaagagaaugugCGCgagcgucgucuGUCUucgUCGGCGUagGCg -3'
miRNA:   3'- -GGCUGGUGCG-------------GUG-----------UAGA---AGCCGCG--CG- -5'
8111 5' -56.8 NC_001978.2 + 37570 0.66 0.55952
Target:  5'- aCCGGCCAUcgGUCACAagCUUCa-UGCGCa -3'
miRNA:   3'- -GGCUGGUG--CGGUGUa-GAAGccGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 38101 0.68 0.455905
Target:  5'- aCCGGCU-CGCCGuCGUCguccuggggCaGCGCGCa -3'
miRNA:   3'- -GGCUGGuGCGGU-GUAGaa-------GcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 38185 0.66 0.581146
Target:  5'- cCCGugCGCucccacaucuGCCACGUCUgaaGGCaGUGg -3'
miRNA:   3'- -GGCugGUG----------CGGUGUAGAag-CCG-CGCg -5'
8111 5' -56.8 NC_001978.2 + 38219 0.71 0.299518
Target:  5'- gCCGcGCCACGCCuucgggACGUCagCGGCuCGCc -3'
miRNA:   3'- -GGC-UGGUGCGG------UGUAGaaGCCGcGCG- -5'
8111 5' -56.8 NC_001978.2 + 39313 0.67 0.503475
Target:  5'- gCCGACCACGaagauugaggguuaCCGCAU--UCaGCGCGa -3'
miRNA:   3'- -GGCUGGUGC--------------GGUGUAgaAGcCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 39417 0.66 0.581146
Target:  5'- cUCGACCG-GCCggaGCGUgaUCGGguCGCGCu -3'
miRNA:   3'- -GGCUGGUgCGG---UGUAgaAGCC--GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 39769 0.73 0.250965
Target:  5'- gCGGCUucccacagaaGCGCCaACGUCUcuucgucgccuUCGGCGUGCc -3'
miRNA:   3'- gGCUGG----------UGCGG-UGUAGA-----------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 39835 0.69 0.436407
Target:  5'- -aGACCGCGCgGCA-----GGCGCGUa -3'
miRNA:   3'- ggCUGGUGCGgUGUagaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 40008 0.68 0.465829
Target:  5'- cCCGACCG-GCCcuaaGUCguggugggGGCGCGCg -3'
miRNA:   3'- -GGCUGGUgCGGug--UAGaag-----CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 40209 0.68 0.475864
Target:  5'- gCGGCUuCGcCCACGUgaUCGaaGCGCGCu -3'
miRNA:   3'- gGCUGGuGC-GGUGUAgaAGC--CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 41116 0.66 0.60294
Target:  5'- -aGcACCACGCCACcuAUCa--GGCacaGCGCa -3'
miRNA:   3'- ggC-UGGUGCGGUG--UAGaagCCG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.