miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 35427 0.68 0.475864
Target:  5'- gUGACaCAUGCCcaACAagaUCacuUUCGGCGCGUc -3'
miRNA:   3'- gGCUG-GUGCGG--UGU---AG---AAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 34223 0.73 0.236491
Target:  5'- gCCGACCACGCUgagcgcaacgcgauACGUCaugcgccgUCGGCGgaGCu -3'
miRNA:   3'- -GGCUGGUGCGG--------------UGUAGa-------AGCCGCg-CG- -5'
8111 5' -56.8 NC_001978.2 + 33132 0.66 0.60294
Target:  5'- gUCGACCgGCGCgGCGUUg--GGCaguaGCGCa -3'
miRNA:   3'- -GGCUGG-UGCGgUGUAGaagCCG----CGCG- -5'
8111 5' -56.8 NC_001978.2 + 32895 0.73 0.220399
Target:  5'- gUCGACCACGCCgACA-CUgagcCGGuCGUGCc -3'
miRNA:   3'- -GGCUGGUGCGG-UGUaGAa---GCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 32276 0.67 0.538124
Target:  5'- gCCGcucagccucaGCCguGCGCCAUccCUcagCGGUGCGCg -3'
miRNA:   3'- -GGC----------UGG--UGCGGUGuaGAa--GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 32163 0.66 0.592026
Target:  5'- gCCGACCGgGgCGgacgggUAUCgaCGGaCGCGCg -3'
miRNA:   3'- -GGCUGGUgCgGU------GUAGaaGCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31667 0.71 0.314663
Target:  5'- gCCGACgACGCCcuuuaugacauuGCGUCguuugagCGGUGCGg -3'
miRNA:   3'- -GGCUGgUGCGG------------UGUAGaa-----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 31488 0.67 0.538124
Target:  5'- gCGugCACGCUuucGCGUCccggguugCGGCGCu- -3'
miRNA:   3'- gGCugGUGCGG---UGUAGaa------GCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 31353 0.69 0.436407
Target:  5'- gCUGAUCACGUCGCcg--UCGGCGUugGCc -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaAGCCGCG--CG- -5'
8111 5' -56.8 NC_001978.2 + 31228 0.69 0.436407
Target:  5'- uCCGACCG-GCCACAccgucaccacUCagcgcgUCGGCGC-Ca -3'
miRNA:   3'- -GGCUGGUgCGGUGU----------AGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 30648 0.66 0.592026
Target:  5'- aUCGAgCACGCacgUACGggCUUCGGCGUc- -3'
miRNA:   3'- -GGCUgGUGCG---GUGUa-GAAGCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 30492 0.66 0.60294
Target:  5'- cCCGACgGCGagauuCGCccgaagGUCggUCGGgGCGCa -3'
miRNA:   3'- -GGCUGgUGCg----GUG------UAGa-AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 30444 0.73 0.220399
Target:  5'- cCCuGCCACGCgagccggGCggCUUCGGCGCGUu -3'
miRNA:   3'- -GGcUGGUGCGg------UGuaGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 28019 0.67 0.545583
Target:  5'- aCCGGCCucaaGCCGCucagugcguucuacGUCgacccgUCGGCGC-Cg -3'
miRNA:   3'- -GGCUGGug--CGGUG--------------UAGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 27264 0.66 0.592026
Target:  5'- gCCGACgACuCCGCgAUUgugUCGG-GCGCu -3'
miRNA:   3'- -GGCUGgUGcGGUG-UAGa--AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 26910 0.66 0.60294
Target:  5'- cCCGACUcgccuucggACGCCAUGaCga-GGCGCGa -3'
miRNA:   3'- -GGCUGG---------UGCGGUGUaGaagCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 26813 0.71 0.299518
Target:  5'- aCGACCuuGCCGCG-CUUCGugguuCGCGCc -3'
miRNA:   3'- gGCUGGugCGGUGUaGAAGCc----GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 26519 0.72 0.264139
Target:  5'- gUCGACCACGCCguucGCGaagCUcaacaGGUGCGCg -3'
miRNA:   3'- -GGCUGGUGCGG----UGUa--GAag---CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 25406 0.67 0.538124
Target:  5'- gCCGACUACGCCGCcgac-CGGUucGgGCu -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaaGCCG--CgCG- -5'
8111 5' -56.8 NC_001978.2 + 25397 0.69 0.436407
Target:  5'- aCCGG-CGCGCCACuuaccAUCUUCGGCu--- -3'
miRNA:   3'- -GGCUgGUGCGGUG-----UAGAAGCCGcgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.