Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8111 | 5' | -56.8 | NC_001978.2 | + | 10043 | 0.67 | 0.500372 |
Target: 5'- gCCGACCGuCGCCAUAg--UCGacccgaugcccucaaGCGCGg -3' miRNA: 3'- -GGCUGGU-GCGGUGUagaAGC---------------CGCGCg -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 6839 | 0.67 | 0.510748 |
Target: 5'- gCGGCCuucacguaaucccgaAUGCCAUAca--CGGCGCGCu -3' miRNA: 3'- gGCUGG---------------UGCGGUGUagaaGCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 23515 | 0.67 | 0.517016 |
Target: 5'- gCUGACCGa-UCAUcUCUucgUCGGCGUGCg -3' miRNA: 3'- -GGCUGGUgcGGUGuAGA---AGCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 12867 | 0.66 | 0.612784 |
Target: 5'- uCUGACCcgACGCCcCAuagguguUCUgagUCgGGCGCGUa -3' miRNA: 3'- -GGCUGG--UGCGGuGU-------AGA---AG-CCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 26910 | 0.66 | 0.60294 |
Target: 5'- cCCGACUcgccuucggACGCCAUGaCga-GGCGCGa -3' miRNA: 3'- -GGCUGG---------UGCGGUGUaGaagCCGCGCg -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 33132 | 0.66 | 0.60294 |
Target: 5'- gUCGACCgGCGCgGCGUUg--GGCaguaGCGCa -3' miRNA: 3'- -GGCUGG-UGCGgUGUAGaagCCG----CGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 16287 | 0.66 | 0.592026 |
Target: 5'- uUGACCgACGUCACGgcguUCgggUCGGCaaGCu -3' miRNA: 3'- gGCUGG-UGCGGUGU----AGa--AGCCGcgCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 30648 | 0.66 | 0.592026 |
Target: 5'- aUCGAgCACGCacgUACGggCUUCGGCGUc- -3' miRNA: 3'- -GGCUgGUGCG---GUGUa-GAAGCCGCGcg -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 38185 | 0.66 | 0.581146 |
Target: 5'- cCCGugCGCucccacaucuGCCACGUCUgaaGGCaGUGg -3' miRNA: 3'- -GGCugGUG----------CGGUGUAGAag-CCG-CGCg -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 39417 | 0.66 | 0.581146 |
Target: 5'- cUCGACCG-GCCggaGCGUgaUCGGguCGCGCu -3' miRNA: 3'- -GGCUGGUgCGG---UGUAgaAGCC--GCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 37295 | 0.66 | 0.570308 |
Target: 5'- uCCGcCCgAUGCCuAgGUCUUCgcacauGGCGCGUu -3' miRNA: 3'- -GGCuGG-UGCGG-UgUAGAAG------CCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 2792 | 0.66 | 0.563829 |
Target: 5'- gCCGuugucuUCACGCCACAUCacagcgccgugaaCGGCGaGCa -3' miRNA: 3'- -GGCu-----GGUGCGGUGUAGaa-----------GCCGCgCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 37570 | 0.66 | 0.55952 |
Target: 5'- aCCGGCCAUcgGUCACAagCUUCa-UGCGCa -3' miRNA: 3'- -GGCUGGUG--CGGUGUa-GAAGccGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 5105 | 0.66 | 0.557369 |
Target: 5'- gUCGAuaCCGCGCUugAUCcggccgucaaagUCGGCGacCGCa -3' miRNA: 3'- -GGCU--GGUGCGGugUAGa-----------AGCCGC--GCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 37536 | 0.67 | 0.54772 |
Target: 5'- gCCGACCACGUugaagagaaugugCGCgagcgucgucuGUCUucgUCGGCGUagGCg -3' miRNA: 3'- -GGCUGGUGCG-------------GUG-----------UAGA---AGCCGCG--CG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 35585 | 0.67 | 0.538124 |
Target: 5'- gCGGgUAUGCC--GUCUcCGGCGCGUu -3' miRNA: 3'- gGCUgGUGCGGugUAGAaGCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 31488 | 0.67 | 0.538124 |
Target: 5'- gCGugCACGCUuucGCGUCccggguugCGGCGCu- -3' miRNA: 3'- gGCugGUGCGG---UGUAGaa------GCCGCGcg -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 503 | 0.67 | 0.538124 |
Target: 5'- cUCGACauaGCGaaGCAUCg--GGUGCGCg -3' miRNA: 3'- -GGCUGg--UGCggUGUAGaagCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 32276 | 0.67 | 0.538124 |
Target: 5'- gCCGcucagccucaGCCguGCGCCAUccCUcagCGGUGCGCg -3' miRNA: 3'- -GGC----------UGG--UGCGGUGuaGAa--GCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 16476 | 0.67 | 0.531759 |
Target: 5'- aCCGACCACGCuUcgaagcccagcgcuuGCGgaguccaacuguUCUUCGGaacgGCGCu -3' miRNA: 3'- -GGCUGGUGCG-G---------------UGU------------AGAAGCCg---CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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