miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 35585 0.67 0.538124
Target:  5'- gCGGgUAUGCC--GUCUcCGGCGCGUu -3'
miRNA:   3'- gGCUgGUGCGGugUAGAaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 37206 0.68 0.465829
Target:  5'- aUGAUCACGUacgccgcuUGCGUCUUCGGUcccaugGCGCc -3'
miRNA:   3'- gGCUGGUGCG--------GUGUAGAAGCCG------CGCG- -5'
8111 5' -56.8 NC_001978.2 + 40209 0.68 0.475864
Target:  5'- gCGGCUuCGcCCACGUgaUCGaaGCGCGCu -3'
miRNA:   3'- gGCUGGuGC-GGUGUAgaAGC--CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 8616 0.68 0.475864
Target:  5'- aCGACaUACGCCauggcgcgaaGCAUCggggcaCGGCGCGa -3'
miRNA:   3'- gGCUG-GUGCGG----------UGUAGaa----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 10043 0.67 0.500372
Target:  5'- gCCGACCGuCGCCAUAg--UCGacccgaugcccucaaGCGCGg -3'
miRNA:   3'- -GGCUGGU-GCGGUGUagaAGC---------------CGCGCg -5'
8111 5' -56.8 NC_001978.2 + 6839 0.67 0.510748
Target:  5'- gCGGCCuucacguaaucccgaAUGCCAUAca--CGGCGCGCu -3'
miRNA:   3'- gGCUGG---------------UGCGGUGUagaaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23515 0.67 0.517016
Target:  5'- gCUGACCGa-UCAUcUCUucgUCGGCGUGCg -3'
miRNA:   3'- -GGCUGGUgcGGUGuAGA---AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 16476 0.67 0.531759
Target:  5'- aCCGACCACGCuUcgaagcccagcgcuuGCGgaguccaacuguUCUUCGGaacgGCGCu -3'
miRNA:   3'- -GGCUGGUGCG-G---------------UGU------------AGAAGCCg---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 32276 0.67 0.538124
Target:  5'- gCCGcucagccucaGCCguGCGCCAUccCUcagCGGUGCGCg -3'
miRNA:   3'- -GGC----------UGG--UGCGGUGuaGAa--GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 503 0.67 0.538124
Target:  5'- cUCGACauaGCGaaGCAUCg--GGUGCGCg -3'
miRNA:   3'- -GGCUGg--UGCggUGUAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31488 0.67 0.538124
Target:  5'- gCGugCACGCUuucGCGUCccggguugCGGCGCu- -3'
miRNA:   3'- gGCugGUGCGG---UGUAGaa------GCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 23630 0.66 0.613879
Target:  5'- gCGGCCAagcuCCGgGUCgUCGGCGaGCg -3'
miRNA:   3'- gGCUGGUgc--GGUgUAGaAGCCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.