miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 40209 0.68 0.475864
Target:  5'- gCGGCUuCGcCCACGUgaUCGaaGCGCGCu -3'
miRNA:   3'- gGCUGGuGC-GGUGUAgaAGC--CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6839 0.67 0.510748
Target:  5'- gCGGCCuucacguaaucccgaAUGCCAUAca--CGGCGCGCu -3'
miRNA:   3'- gGCUGG---------------UGCGGUGUagaaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 37570 0.66 0.55952
Target:  5'- aCCGGCCAUcgGUCACAagCUUCa-UGCGCa -3'
miRNA:   3'- -GGCUGGUG--CGGUGUa-GAAGccGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 33132 0.66 0.60294
Target:  5'- gUCGACCgGCGCgGCGUUg--GGCaguaGCGCa -3'
miRNA:   3'- -GGCUGG-UGCGgUGUAGaagCCG----CGCG- -5'
8111 5' -56.8 NC_001978.2 + 36433 0.7 0.380938
Target:  5'- gCCgGACCAUGCC-CAUUcgCuGUGCGCg -3'
miRNA:   3'- -GG-CUGGUGCGGuGUAGaaGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 21201 0.68 0.455905
Target:  5'- gUCGACCugGgCGCGaaucacCUUCaGCGCGUc -3'
miRNA:   3'- -GGCUGGugCgGUGUa-----GAAGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 16476 0.67 0.531759
Target:  5'- aCCGACCACGCuUcgaagcccagcgcuuGCGgaguccaacuguUCUUCGGaacgGCGCu -3'
miRNA:   3'- -GGCUGGUGCG-G---------------UGU------------AGAAGCCg---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 26910 0.66 0.60294
Target:  5'- cCCGACUcgccuucggACGCCAUGaCga-GGCGCGa -3'
miRNA:   3'- -GGCUGG---------UGCGGUGUaGaagCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 19526 0.68 0.455905
Target:  5'- aCCGAUCguGCGCCcCAUCcaUUCGucacCGCGCg -3'
miRNA:   3'- -GGCUGG--UGCGGuGUAG--AAGCc---GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 12867 0.66 0.612784
Target:  5'- uCUGACCcgACGCCcCAuagguguUCUgagUCgGGCGCGUa -3'
miRNA:   3'- -GGCUGG--UGCGGuGU-------AGA---AG-CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23515 0.67 0.517016
Target:  5'- gCUGACCGa-UCAUcUCUucgUCGGCGUGCg -3'
miRNA:   3'- -GGCUGGUgcGGUGuAGA---AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 37206 0.68 0.465829
Target:  5'- aUGAUCACGUacgccgcuUGCGUCUUCGGUcccaugGCGCc -3'
miRNA:   3'- gGCUGGUGCG--------GUGUAGAAGCCG------CGCG- -5'
8111 5' -56.8 NC_001978.2 + 31488 0.67 0.538124
Target:  5'- gCGugCACGCUuucGCGUCccggguugCGGCGCu- -3'
miRNA:   3'- gGCugGUGCGG---UGUAGaa------GCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 5105 0.66 0.557369
Target:  5'- gUCGAuaCCGCGCUugAUCcggccgucaaagUCGGCGacCGCa -3'
miRNA:   3'- -GGCU--GGUGCGGugUAGa-----------AGCCGC--GCG- -5'
8111 5' -56.8 NC_001978.2 + 39417 0.66 0.581146
Target:  5'- cUCGACCG-GCCggaGCGUgaUCGGguCGCGCu -3'
miRNA:   3'- -GGCUGGUgCGG---UGUAgaAGCC--GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 16287 0.66 0.592026
Target:  5'- uUGACCgACGUCACGgcguUCgggUCGGCaaGCu -3'
miRNA:   3'- gGCUGG-UGCGGUGU----AGa--AGCCGcgCG- -5'
8111 5' -56.8 NC_001978.2 + 13433 0.71 0.329581
Target:  5'- uCCGuGCCaAUGCCGcCGUCUUCGuugcacaGCGCGUa -3'
miRNA:   3'- -GGC-UGG-UGCGGU-GUAGAAGC-------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23877 0.7 0.373033
Target:  5'- uCCGGCgACGCCGgGUCgagcgcugccacuagUCGGCaauCGCg -3'
miRNA:   3'- -GGCUGgUGCGGUgUAGa--------------AGCCGc--GCG- -5'
8111 5' -56.8 NC_001978.2 + 31353 0.69 0.436407
Target:  5'- gCUGAUCACGUCGCcg--UCGGCGUugGCc -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaAGCCGCG--CG- -5'
8111 5' -56.8 NC_001978.2 + 6350 0.68 0.454919
Target:  5'- aCCGAaucguuuCCgGCGUCGgGUCUUCGGcCGUGUc -3'
miRNA:   3'- -GGCU-------GG-UGCGGUgUAGAAGCC-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.