miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 30444 0.73 0.220399
Target:  5'- cCCuGCCACGCgagccggGCggCUUCGGCGCGUu -3'
miRNA:   3'- -GGcUGGUGCGg------UGuaGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 10043 0.67 0.500372
Target:  5'- gCCGACCGuCGCCAUAg--UCGacccgaugcccucaaGCGCGg -3'
miRNA:   3'- -GGCUGGU-GCGGUGUagaAGC---------------CGCGCg -5'
8111 5' -56.8 NC_001978.2 + 19526 0.68 0.455905
Target:  5'- aCCGAUCguGCGCCcCAUCcaUUCGucacCGCGCg -3'
miRNA:   3'- -GGCUGG--UGCGGuGUAG--AAGCc---GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 25397 0.69 0.436407
Target:  5'- aCCGG-CGCGCCACuuaccAUCUUCGGCu--- -3'
miRNA:   3'- -GGCUgGUGCGGUG-----UAGAAGCCGcgcg -5'
8111 5' -56.8 NC_001978.2 + 20460 0.7 0.380938
Target:  5'- gCCGACCgGCGCgACucgaCUUCGGCcuuCGCc -3'
miRNA:   3'- -GGCUGG-UGCGgUGua--GAAGCCGc--GCG- -5'
8111 5' -56.8 NC_001978.2 + 22260 1.14 0.000279
Target:  5'- uCCGACCACGCCACAUCUUCGGCGCGCa -3'
miRNA:   3'- -GGCUGGUGCGGUGUAGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 4109 0.73 0.244584
Target:  5'- uCgGGCagggGCGUCAUGUCUucagCGGCGCGCa -3'
miRNA:   3'- -GgCUGg---UGCGGUGUAGAa---GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 39769 0.73 0.250965
Target:  5'- gCGGCUucccacagaaGCGCCaACGUCUcuucgucgccuUCGGCGUGCc -3'
miRNA:   3'- gGCUGG----------UGCGG-UGUAGA-----------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6093 0.71 0.296557
Target:  5'- gUGACCgucagaaccuucGCGCCccggGCGUCgacaagaagaccgUCGGCGCGCu -3'
miRNA:   3'- gGCUGG------------UGCGG----UGUAGa------------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 13433 0.71 0.329581
Target:  5'- uCCGuGCCaAUGCCGcCGUCUUCGuugcacaGCGCGUa -3'
miRNA:   3'- -GGC-UGG-UGCGGU-GUAGAAGC-------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 4417 0.68 0.49009
Target:  5'- aCGugUACGCCACGUUcaaccacgacacgcgUUCccuacuGGgGCGCa -3'
miRNA:   3'- gGCugGUGCGGUGUAG---------------AAG------CCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 22078 0.67 0.491114
Target:  5'- aCGACCuguuugaGCGCCugAUCcggggugaguacgUCGGCcguguGCGCg -3'
miRNA:   3'- gGCUGG-------UGCGGugUAGa------------AGCCG-----CGCG- -5'
8111 5' -56.8 NC_001978.2 + 5626 0.67 0.496247
Target:  5'- gCGACCgGCGCCAacgcugcCUUCGGUGagGCu -3'
miRNA:   3'- gGCUGG-UGCGGUgua----GAAGCCGCg-CG- -5'
8111 5' -56.8 NC_001978.2 + 13655 0.68 0.486005
Target:  5'- gCGACuCGCGCCuauGCGg--UCGGCGC-Cg -3'
miRNA:   3'- gGCUG-GUGCGG---UGUagaAGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 19365 0.68 0.483968
Target:  5'- cCCGACgGaCGCCgACGUgacgugcaagCGGUGCGCg -3'
miRNA:   3'- -GGCUGgU-GCGG-UGUAgaa-------GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 26813 0.71 0.299518
Target:  5'- aCGACCuuGCCGCG-CUUCGugguuCGCGCc -3'
miRNA:   3'- gGCUGGugCGGUGUaGAAGCc----GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 39313 0.67 0.503475
Target:  5'- gCCGACCACGaagauugaggguuaCCGCAU--UCaGCGCGa -3'
miRNA:   3'- -GGCUGGUGC--------------GGUGUAgaAGcCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 24573 0.7 0.380938
Target:  5'- gUCGGCgGCGUCAUgGUCggcauaugugUCGGCGUGCu -3'
miRNA:   3'- -GGCUGgUGCGGUG-UAGa---------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6342 0.69 0.426839
Target:  5'- cUCGACCACGUgucgCGCAUUcccgaUCGG-GCGCu -3'
miRNA:   3'- -GGCUGGUGCG----GUGUAGa----AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 11527 0.69 0.426839
Target:  5'- gCGACguCGCCuuACAUCgUgGGCGaCGCu -3'
miRNA:   3'- gGCUGguGCGG--UGUAGaAgCCGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.