Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8111 | 5' | -56.8 | NC_001978.2 | + | 22225 | 0.7 | 0.363524 |
Target: 5'- aCGGCUAUGCCGgAUCgUUCGauguggucauGCGCGUa -3' miRNA: 3'- gGCUGGUGCGGUgUAG-AAGC----------CGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 36345 | 0.7 | 0.338453 |
Target: 5'- aCGACgACGCC-CuUCgUCaGCGCGCa -3' miRNA: 3'- gGCUGgUGCGGuGuAGaAGcCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 26813 | 0.71 | 0.299518 |
Target: 5'- aCGACCuuGCCGCG-CUUCGugguuCGCGCc -3' miRNA: 3'- gGCUGGugCGGUGUaGAAGCc----GCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 24916 | 0.72 | 0.270933 |
Target: 5'- gCCGACgCuGCGCacaACAUgCUUcCGGCGUGCg -3' miRNA: 3'- -GGCUG-G-UGCGg--UGUA-GAA-GCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 34223 | 0.73 | 0.236491 |
Target: 5'- gCCGACCACGCUgagcgcaacgcgauACGUCaugcgccgUCGGCGgaGCu -3' miRNA: 3'- -GGCUGGUGCGG--------------UGUAGa-------AGCCGCg-CG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 40008 | 0.68 | 0.465829 |
Target: 5'- cCCGACCG-GCCcuaaGUCguggugggGGCGCGCg -3' miRNA: 3'- -GGCUGGUgCGGug--UAGaag-----CCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 35427 | 0.68 | 0.475864 |
Target: 5'- gUGACaCAUGCCcaACAagaUCacuUUCGGCGCGUc -3' miRNA: 3'- gGCUG-GUGCGG--UGU---AG---AAGCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 30492 | 0.66 | 0.60294 |
Target: 5'- cCCGACgGCGagauuCGCccgaagGUCggUCGGgGCGCa -3' miRNA: 3'- -GGCUGgUGCg----GUG------UAGa-AGCCgCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 41116 | 0.66 | 0.60294 |
Target: 5'- -aGcACCACGCCACcuAUCa--GGCacaGCGCa -3' miRNA: 3'- ggC-UGGUGCGGUG--UAGaagCCG---CGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 32163 | 0.66 | 0.592026 |
Target: 5'- gCCGACCGgGgCGgacgggUAUCgaCGGaCGCGCg -3' miRNA: 3'- -GGCUGGUgCgGU------GUAGaaGCC-GCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 27264 | 0.66 | 0.592026 |
Target: 5'- gCCGACgACuCCGCgAUUgugUCGG-GCGCu -3' miRNA: 3'- -GGCUGgUGcGGUG-UAGa--AGCCgCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 35579 | 0.66 | 0.581146 |
Target: 5'- -aGACgGCGCCcCugagCgUCGGCGCGa -3' miRNA: 3'- ggCUGgUGCGGuGua--GaAGCCGCGCg -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 28019 | 0.67 | 0.545583 |
Target: 5'- aCCGGCCucaaGCCGCucagugcguucuacGUCgacccgUCGGCGC-Cg -3' miRNA: 3'- -GGCUGGug--CGGUG--------------UAGa-----AGCCGCGcG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 25406 | 0.67 | 0.538124 |
Target: 5'- gCCGACUACGCCGCcgac-CGGUucGgGCu -3' miRNA: 3'- -GGCUGGUGCGGUGuagaaGCCG--CgCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 15408 | 0.67 | 0.496247 |
Target: 5'- uCUGACCG----GCGUCgUUGGCGCGCg -3' miRNA: 3'- -GGCUGGUgcggUGUAGaAGCCGCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 5626 | 0.67 | 0.496247 |
Target: 5'- gCGACCgGCGCCAacgcugcCUUCGGUGagGCu -3' miRNA: 3'- gGCUGG-UGCGGUgua----GAAGCCGCg-CG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 22078 | 0.67 | 0.491114 |
Target: 5'- aCGACCuguuugaGCGCCugAUCcggggugaguacgUCGGCcguguGCGCg -3' miRNA: 3'- gGCUGG-------UGCGGugUAGa------------AGCCG-----CGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 4417 | 0.68 | 0.49009 |
Target: 5'- aCGugUACGCCACGUUcaaccacgacacgcgUUCccuacuGGgGCGCa -3' miRNA: 3'- gGCugGUGCGGUGUAG---------------AAG------CCgCGCG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 13655 | 0.68 | 0.486005 |
Target: 5'- gCGACuCGCGCCuauGCGg--UCGGCGC-Cg -3' miRNA: 3'- gGCUG-GUGCGG---UGUagaAGCCGCGcG- -5' |
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8111 | 5' | -56.8 | NC_001978.2 | + | 19365 | 0.68 | 0.483968 |
Target: 5'- cCCGACgGaCGCCgACGUgacgugcaagCGGUGCGCg -3' miRNA: 3'- -GGCUGgU-GCGG-UGUAgaa-------GCCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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